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1por Carper, Dana L., Weston, David J., Barde, Aditya, Timm, Collin M., Lu, Tse-Yuan, Burdick, Leah H., Jawdy, Sara S., Klingeman, Dawn M., Robeson, Michael S., Veach, Allison M., Cregger, Melissa A., Kalluri, Udaya C., Schadt, Christopher W., Podar, Mircea, Doktycz, Mitchel J., Pelletier, Dale A.“…We then explore a simplified microbiome, comprised of 10 strains representing abundant taxa from environmental samples, and tested for their ability to reproducibly colonize Populus root tissue. The 10-member simplified community was able to reproducibly colonize on Populus roots after 21 days, with some taxa found in surface-sterilized aboveground tissue. …”
Publicado 2021
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2por Yang, Yongil, Labbé, Jessy, Muchero, Wellington, Yang, Xiaohan, Jawdy, Sara S., Kennedy, Megan, Johnson, Jenifer, Sreedasyam, Avinash, Schmutz, Jeremy, Tuskan, Gerald A., Chen, Jin-Gui“…Expansion of the Populus LecRLKs (PtLecRLKs) occurred partially through tandem duplication. …”
Publicado 2016
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3por Timm, Collin M., Carter, Kelsey R., Carrell, Alyssa A., Jun, Se-Ran, Jawdy, Sara S., Vélez, Jessica M., Gunter, Lee E., Yang, Zamin, Nookaew, Intawat, Engle, Nancy L., Lu, Tse-Yuan S., Schadt, Christopher W., Tschaplinski, Timothy J., Doktycz, Mitchel J., Tuskan, Gerald A., Pelletier, Dale A., Weston, David J.“…Using a microbiome inoculation strategy, we studied how the belowground microbiome of Populus deltoides changes in response to diverse environmental conditions, including water limitation, light limitation (shading), and metal toxicity. …”
Publicado 2018
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4por Abraham, Paul E., Garcia, Benjamin J., Gunter, Lee E., Jawdy, Sara S., Engle, Nancy, Yang, Xiaohan, Jacobson, Daniel A., Hettich, Robert L., Tuskan, Gerald A., Tschaplinski, Timothy J.“…In total, we identified 108,012 peptide sequences across both experiments that provided insight into the quantitative state of 22,737 Populus gene models and 8,199 functional protein groups in response to drought. …”
Publicado 2018
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5por Zhang, Jin, Xie, Meng, Li, Mi, Ding, Jinhua, Pu, Yunqiao, Bryan, Anthony C., Rottmann, William, Winkeler, Kimberly A., Collins, Cassandra M., Singan, Vasanth, Lindquist, Erika A., Jawdy, Sara S., Gunter, Lee E., Engle, Nancy L., Yang, Xiaohan, Barry, Kerrie, Tschaplinski, Timothy J., Schmutz, Jeremy, Tuskan, Gerald A., Muchero, Wellington, Chen, Jin‐Gui“…Here, we report the functional characterization of a PFD gene from Populus deltoides, designated as PdPFD2.2. There are two copies of PFD2 in Populus, and PdPFD2.2 was ubiquitously expressed with high transcript abundance in the cambial region. …”
Publicado 2019
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6por Payyavula, Raja S., Badmi, Raghuram, Jawdy, Sara S., Rodriguez, Miguel, Gunter, Lee, Sykes, Robert W., Winkeler, Kimberly A., Collins, Cassandra M., Rottmann, William H., Chen, Jin‐Gui, Yang, Xiaohan, Tuskan, Gerald A, Kalluri, Udaya C.“…The functional aspects of SND1 homologs in the woody Populus have been studied through transgenic manipulation. …”
Publicado 2022
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7por Xie, Meng, Zhang, Jin, Singan, Vasanth R., McGranahan, Melissa J., LaFayette, Peter R., Jawdy, Sara S., Engle, Nancy, Doeppke, Crissa, Tschaplinski, Timothy J., Davis, Mark F., Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Parrott, Wayne A., Chen, Feng, Tuskan, Gerald A., Chen, Jin‐Gui, Muchero, Wellington“…Our previous studies have demonstrated that Populus trichocarpa PtrEPSP‐TF, an isoform of 5‐enolpyruvylshikimate 3‐phosphate (EPSP) synthase, has transcriptional activity and regulates phenylpropanoid biosynthesis in Populus. …”
Publicado 2020
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8por Yang, Yongil, Yoo, Chang Geun, Winkeler, Kimberly A., Collins, Cassandra M., Hinchee, Maud A. W., Jawdy, Sara S., Gunter, Lee E., Engle, Nancy L., Pu, Yunqiao, Yang, Xiaohan, Tschaplinski, Timothy J., Ragauskas, Arthur J., Tuskan, Gerald A., Chen, Jin-Gui“…A total of 52 DUF231-containing proteins were identified in the Populus genome. In P. deltoides transgenic lines overexpressing PdDUF231A (OXPdDUF231A), glucose and cellulose contents were increased. …”
Publicado 2017
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9por Badmi, Raghuram, Payyavula, Raja S., Bali, Garima, Guo, Hao-Bo, Jawdy, Sara S., Gunter, Lee E., Yang, Xiaohan, Winkeler, Kimberly A., Collins, Cassandra, Rottmann, William H., Yee, Kelsey, Rodriguez, Miguel, Sykes, Robert W., Decker, Stephen R., Davis, Mark F., Ragauskas, Arthur J., Tuskan, Gerald A., Kalluri, Udaya C.“…The present study describes a new functional role of PdIQD10, a Populus gene belonging to the IQ67-Domain1 family of IQD genes, in impacting biomass formation and chemistry. …”
Publicado 2018
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10por Yang, Yongil, Yoo, Chang Geun, Rottmann, William, Winkeler, Kimberly A., Collins, Cassandra M., Gunter, Lee E., Jawdy, Sara S., Yang, Xiaohan, Pu, Yunqiao, Ragauskas, Arthur J., Tuskan, Gerald A., Chen, Jin-Gui“…RESULTS: Here we report the functional characterization of Populus deltoides WOOD-ASSOCIATED NAC DOMAIN protein 3 (PdWND3A), a sequence homolog of Arabidopsis VND4 and VND5 that are members of transcription factor networks regulating secondary cell wall biosynthesis. …”
Publicado 2019
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11por Bible, Amber N., Fletcher, Sarah J., Pelletier, Dale A., Schadt, Christopher W., Jawdy, Sara S., Weston, David J., Engle, Nancy L., Tschaplinski, Timothy, Masyuko, Rachel, Polisetti, Sneha, Bohn, Paul W., Coutinho, Teresa A., Doktycz, Mitchel J., Morrell-Falvey, Jennifer L.“…YR343 is a motile, rod-shaped bacterium isolated from the roots of Populus deltoides that possesses the ability to solubilize phosphate and produce the phytohormone indole-3-acetic acid (IAA). …”
Publicado 2016
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12por Kalluri, Udaya C., Payyavula, Raja S., Labbé, Jessy L., Engle, Nancy, Bali, Garima, Jawdy, Sara S., Sykes, Robert W., Davis, Mark, Ragauskas, Arthur, Tuskan, Gerald A., Tschaplinski, Timothy J.“…Here, we studied the impact of down-regulating KORRIGAN-like cell wall biosynthesis genes, belonging to the endo-β-1,4-glucanase gene family, on Populus growth, metabolism and the ability to interact with symbiotic microbes. …”
Publicado 2016
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13por Yang, Yongil, Yoo, Chang Geun, Guo, Hao-Bo, Rottmann, William, Winkeler, Kimberly A., Collins, Cassandra M., Gunter, Lee E., Jawdy, Sara S., Yang, Xiaohan, Guo, Hong, Pu, Yunqiao, Ragauskas, Arthur J., Tuskan, Gerald A., Chen, Jin-Gui“…We report the functional characterization of one member of DUF266 proteins in Populus, PdDUF266A. PdDUF266A was ubiquitously expressed with high abundance in the xylem. …”
Publicado 2017
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14por Timm, Collin M., Pelletier, Dale A., Jawdy, Sara S., Gunter, Lee E., Henning, Jeremiah A., Engle, Nancy, Aufrecht, Jayde, Gee, Emily, Nookaew, Intawat, Yang, Zamin, Lu, Tse-Yuan, Tschaplinski, Timothy J., Doktycz, Mitchel J., Tuskan, Gerald A., Weston, David J.“…To understand the contribution of individual microbiome members in a community, we studied the function of a simplified community consisting of Pseudomonas and Burkholderia bacterial strains isolated from Populus hosts and inoculated on axenic Populus cutting in controlled laboratory conditions. …”
Publicado 2016
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15por Henning, Jeremiah A., Weston, David J., Pelletier, Dale A., Timm, Collin M., Jawdy, Sara S., Classen, Aimée T.“…Here, we explored how three bacterial strains isolated from the Populus root microbiome, influenced plant phenotype. …”
Publicado 2016
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16por Carrell, Alyssa A., Hicks, Brittany B., Sidelinger, Emilie, Johnston, Eric R., Jawdy, Sara S., Clark, Miranda M., Klingeman, Dawn M., Cregger, Melissa A.“…In this study, we examine how nitrogen addition alters plant-fungal interactions within two species of Populus - Populus deltoides and P. trichocarpa. In this experiment, we manipulated plant host, starting soil (native vs. away for each tree species), and nitrogen addition in a fully factorial replicated design. …”
Publicado 2023
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