Mostrando 1 - 19 Resultados de 19 Para Buscar '"wiki"', tiempo de consulta: 0.35s Limitar resultados
  1. 1
    “…WikiPathways (https://www.wikipathways.org) is a biological pathway database known for its collaborative nature and open science approaches. …”
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    WikiPathways: connecting communities
  2. 2
    “…Reactome and WikiPathways are two of the most popular freely available databases for biological pathways. …”
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    Reactome from a WikiPathways Perspective
  3. 3
    “…Here, we describe the development of WikiPathways (http://www.wikipathways.org), a public wiki for pathway curation, since it was first published in 2008. …”
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    WikiPathways: building research communities on biological pathways
  4. 4
    “…WikiPathways (http://www.wikipathways.org) is an open, collaborative platform for capturing and disseminating models of biological pathways for data visualization and analysis. …”
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    WikiPathways: capturing the full diversity of pathway knowledge
  5. 5
    “…In this paper we present the open-source WikiPathways app for Cytoscape ( http://apps.cytoscape.org/apps/wikipathways) that can be used to import biological pathways for data visualization and network analysis. …”
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    WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization
  6. 6
    “…WikiPathways (wikipathways.org) captures the collective knowledge represented in biological pathways. …”
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    WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
  7. 7
    “…The ability to use pathway information to form new links across diverse biological data highlights the utility of integrating WikiPathways in the semantic web.…”
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    Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources
  8. 8
    “…To address this, updated WikiPathways data has been added to the platform. …”
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    Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform
  9. 9
    “…Here, we show for the first time how these pathway models can be used and integrated into one large network using the WikiPathways RDF containing all human WikiPathways and Reactome pathways, to perform network analysis on transcriptomics data. …”
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    Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome
  10. 10
    “…WikiPathways supports multiple drawing styles which need harmonizing to offer semantically enriched access. …”
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    Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions
  11. 11
    “…Moreover, for Bos taurus we created a gene identifier mapping database with bridgeDb and a pathway collection in WikiPathways. The regulation of marbling is possibly the result of the interplay between signaling pathways in muscle, fat, and intramuscular connective tissue. …”
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    Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding
  12. 12
    “…In this study, we mapped the proteomics data obtained from Nie X. et al. (2021) to the pathway models of the COVID-19 Disease Map project and WikiPathways. The differences in pathway activities between COVID-19 and non-COVID-19 patients were calculated using the Wilcoxon test. …”
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    Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients
  13. 13
    “…As an online editor PathVisio is also integrated in the community curated pathway database WikiPathways. Here we present the third version of PathVisio with the newest additions and improvements of the application. …”
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    PathVisio 3: An Extendable Pathway Analysis Toolbox
  14. 14
    “…We mapped 580 SNPs to 360 genes, and then selected 460 pathways containing these genes from the curated collection of WikiPathways. We then created and analyzed SNP-gene and SNP-gene-pathway network modules in Cytoscape. …”
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    From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results
  15. 15
    “…Molecular pathway overrepresentation analysis was performed with PathVisio using pathway content from three pathway databases: WikiPathways, KEGG and Reactome. In addition, Gene Ontology (GO) analysis was performed on the gene expression data. …”
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    Comprehensive bioinformatics analysis of trabecular meshwork gene expression data to unravel the molecular pathogenesis of primary open‐angle glaucoma
  16. 16
    “…Pathway analysis revealed seven significantly altered pathways in the WikiPathways human pathway collection. These pathways were then merged into one combined network with 408 gene products, 38 metabolites and 5 pathway nodes. …”
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    A network biology workflow to study transcriptomics data of the diabetic liver
  17. 17
    “…How this model can be used to make data between various resources interoperable is demonstrated by integrating data from NCBI (National Center for Biotechnology Information) Taxonomy, NCBI Genes, UniProt, and WikiPathways. Based on that model, a set of automated applications or bots were written for regular updates of these sources in Wikidata and added to a platform for automatically running these updates. …”
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    A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
  18. 18
    “…It supports the use of existing pathways from WikiPathways or pathways created using the RPC itself. …”
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    Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment
  19. 19
    “…We modified and applied the pathway interaction method, originally proposed by Kelder et al. (2011), on a network created using the WikiPathways pathway repository and the STRING protein-protein interaction database. …”
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    Exploring pathway interactions to detect molecular mechanisms of disease: 22q11.2 deletion syndrome
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