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1por Benham, Phred M, Cicero, Carla, Escalona, Merly, Beraut, Eric, Marimuthu, Mohan P A, Nguyen, Oanh, Nachman, Michael W, Bowie, Rauri C K“…The California quail (Callipepla californica) is an iconic native bird of scrub and oak woodlands in California and the Baja Peninsula of Mexico. …”
Publicado 2023
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2por Paggeot, Lisa X, DeBiasse, Melissa B, Escalona, Merly, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Sahasrabudhe, Ruta, Dawson, Michael N“…The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. …”
Publicado 2022
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3por Fitz-Gibbon, Sorel, Mead, Alayna, O’Donnell, Scott, Li, Zhi-Zhong, Escalona, Merly, Beraut, Eric, Sacco, Samuel, Marimuthu, Mohan P A, Nguyen, Oanh, Sork, Victoria L“…Juglans californica, California walnut, is a vulnerable small tree that is locally abundant but restricted to woodland and chaparral habitats of Southern California threatened by urbanization and land use change. …”
Publicado 2023
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4por DeRaad, Devon A, Escalona, Merly, Benham, Phred M, Marimuthu, Mohan P A, Sahasrabudhe, Ruta M, Nguyen, Oanh, Chumchim, Noravit, Beraut, Eric, Fairbairn, Colin W, Seligmann, William, Bowie, Rauri C K, Cicero, Carla, McCormack, John E, Wayne, Robert K“…We extracted high molecular weight genomic DNA from a female California Scrub-Jay from northern California and generated PacBio HiFi long-read data and Omni-C chromatin conformation capture data. …”
Publicado 2023
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5por Bernardi, Giacomo, DeBiasse, Melissa, Escalona, Merly, Marimuthu, Mohan P A, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Miller, Courtney, Toffelmier, Erin, Shaffer, H Bradley“…Keystone species are known to play a critical role in kelp forest health, including the well-known killer whales, sea otter, sea urchin, kelp trophic cascade in the Aleutian Islands, Alaska, USA. In California, a major player in the regulation of sea urchin abundance, and in turn, the health of kelp forests ecosystems, is a large wrasse, the California Sheephead, Semicossyphus pulcher. …”
Publicado 2022
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6por Bernardi, Giacomo, Toy, Jason A, Escalona, Merly, Marimuthu, Mohan P A, Sahasrabudhe, Ruta, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Toffelmier, Erin, Miller, Courtney, Shaffer, H Bradley“…This life history trait translates into limited dispersal, strong population structure, and an unusually strong potential for local adaptation in a marine fish. As part of the California Conservation Genomics Project (CCGP), we sequenced the genome of the Black Surfperch, Embiotoca jacksoni, to establish a genomic model for understanding phylogeographic patterns of marine organisms in California. …”
Publicado 2022
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7por Chaturvedi, Samridhi, Escalona, Merly, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Fairbairn, Colin W, Seligmann, William, Miller, Courtney, Bradley Shaffer, H, Whiteman, Noah K“…The California Pipevine Swallowtail Butterfly, Battus philenor hirsuta, and its host plant, the California Pipevine or Dutchman’s Pipe, Aristolochia californica Torr., are an important California endemic species pair. …”
Publicado 2023
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8por Wright, Daniel B, Escalona, Merly, Marimuthu, Mohan P A, Sahasrabudhe, Ruta, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Toffelmier, Erin, Miller, Courtney, Shaffer, H Bradley, Bernardi, Giacomo, German, Donovan P“…Pricklebacks (Family Stichaeidae) are generally cold-temperate fishes most commonly found in the north Pacific. As part of the California Conservation Genomics Project (CCGP), we sequenced the genome of the Monkeyface Prickleback, Cebidichthys violaceus, to establish a genomic model for understanding phylogeographic patterns of marine organisms in California. …”
Publicado 2022
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9por Kieran Blair, Shannon Rose, Schreier, Andrea, Escalona, Merly, Finger, Amanda J, Joslin, Shannon E K, Sahasrabudhe, Ruta, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Morris, Emily Reister, Mangelson, Hayley, Hull, Joshua“…Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. …”
Publicado 2022
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10por Kieran Blair, Shannon Rose, Hull, Joshua, Escalona, Merly, Finger, Amanda, Joslin, Shannon E K, Sahasrabudhe, Ruta, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Morris, Emily Reister, Velazquez, Samantha, Schreier, Andrea“…L. packardi is a key food source for other conserved California species including the California Tiger Salamander Ambystoma californiense. …”
Publicado 2022
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11por Bishop, Anusha P, Westeen, Erin P, Yuan, Michael L, Escalona, Merly, Beraut, Eric, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Toffelmier, Erin, Fisher, Robert N, Shaffer, H. Bradley, Wang, Ian J“…The western fence lizard, Sceloporus occidentalis, is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. …”
Publicado 2023
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12por Adams, Julia N, Escalona, Merly, Marimuthu, Mohan P A, Fairbairn, Colin W, Beraut, Eric, Seligmann, William, Nguyen, Oanh, Chumchim, Noravit, Stajich, Jason E“…Lichen thallus tissue was collected from Pinkham Canyon in Joshua Tree National Park, California and deposited in the UC Riverside herbarium under accession #295874. …”
Publicado 2023
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13por Cornwell, Brendan H, Beraut, Eric, Fairbairn, Colin, Nguyen, Oanh, Marimuthu, Mohan P A, Escalona, Merly, Toffelmier, Erin“…The sunburst anemone Anthopleura sola is an abundant species inhabiting the intertidal zone of coastal California. Historically, this species has extended from Baja California, Mexico to as far north as Monterey Bay, CA. …”
Publicado 2022
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14por Huang, Yi, Escalona, Merly, Morrison, Glen, Marimuthu, Mohan P A, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Litt, Amy“…Arctostaphylos (Ericaceae) species, commonly known as manzanitas, are an invaluable fire-adapted chaparral clade in the California Floristic Province (CFP), a world biodiversity hotspot on the west coast of North America. …”
Publicado 2021
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15por Anghel, Ioana G, Jacobs, Sarah J, Escalona, Merly, Marimuthu, Mohan P A, Fairbairn, Colin W, Beraut, Eric, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Zapata, Felipe“…Despite the importance of L. parryae in the development of landscape genetics and phylogeography, there are no genomic resources available for the species. Through the California Conservation Genomics Project, we assembled the first genome in the genus Linanthus. …”
Publicado 2022
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16por Griffiths, Joanna S, Sahasrabudhe, Ruta M, Marimuthu, Mohan P A, Chumchim, Noravit, Nguyen, Oanh H, Beraut, Eric, Escalona, Merly, Whitehead, Andrew“…Here, we present a new red abalone reference genome as part of the California Conservation Genomics Project (CCGP). Following the CCGP genome strategy, we used Pacific Biosciences HiFi long reads and Dovetail Omni-C data to generate a scaffold-level assembly. …”
Publicado 2022
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17por Benham, Phred M, Cicero, Carla, DeRaad, Devon A, McCormack, John E, Wayne, Robert K, Escalona, Merly, Beraut, Eric, Marimuthu, Mohan P A, Nguyen, Oanh, Nachman, Michael W, Bowie, Rauri C K“…Here, we report a draft reference assembly for the species generated from PacBio HiFi long-read and Omni-C chromatin-proximity sequencing data as part of the California Conservation Genomics Project (CCGP). Sequenced reads were assembled into 352 scaffolds totaling 1.16 Gb in length. …”
Publicado 2023
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18por Westeen, Erin P, Escalona, Merly, Holding, Matthew L, Beraut, Eric, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Perri, Ralph, Fisher, Robert N, Toffelmier, Erin, Shaffer, H Bradley, Wang, Ian J“…The western rattlesnake (Crotalus oreganus) is one of the widest ranging rattlesnake species, with a distribution from British Columbia, where it is listed as threatened, to Baja California and east across the Great Basin to western Wyoming, Colorado and New Mexico. …”
Publicado 2023
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19por DeBiasse, Melissa B, Schiebelhut, Lauren M, Escalona, Merly, Beraut, Eric, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Sahasrabudhe, Ruta, Dawson, Michael N“…Efforts to protect the ecologically and economically significant California Current Ecosystem from global change will greatly benefit from data about patterns of local adaptation and population connectivity. …”
Publicado 2022
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20A reference genome assembly for the continentally distributed ring-necked snake, Diadophis punctatuspor Westeen, Erin P, Escalona, Merly, Beraut, Eric, Marimuthu, Mohan P A, Nguyen, Oanh, Fisher, Robert N, Toffelmier, Erin, Shaffer, H Bradley, Wang, Ian J“…Here, we report a new reference genome assembly for the San Diego ring-necked snake, D. p. similis, as part of the California Conservation Genomics Project. This assembly comprises a total of 444 scaffolds spanning 1,783 Mb and has a contig N50 of 8.0 Mb, scaffold N50 of 83 Mb, and BUSCO completeness score of 94.5%. …”
Publicado 2023
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