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1por Graveley, Brenton R., Brooks, Angela N., Carlson, Joseph W., Duff, Michael O., Landolin, Jane M., Yang, Li, Artieri, Carlo G., van Baren, Marijke J., Boley, Nathan, Booth, Benjamin W., Brown, James B., Cherbas, Lucy, Davis, Carrie A., Dobin, Alex, Li, Renhua, Lin, Wei, Malone, John H., Mattiuzzo, Nicolas R., Miller, David, Sturgill, David, Tuch, Brian B., Zaleski, Chris, Zhang, Dayu, Blanchette, Marco, Dudoit, Sandrine, Eads, Brian, Green, Richard E., Hammonds, Ann, Jiang, Lichun, Kapranov, Phil, Langton, Laura, Perrimon, Norbert, Sandler, Jeremy E., Wan, Kenneth H., Willingham, Aarron, Zhang, Yu, Zou, Yi, Andrews, Justen, Bickel, Peter J., Brenner, Steven E., Brent, Michael R., Cherbas, Peter, Gingeras, Thomas R., Hoskins, Roger A., Kaufman, Thomas C., Oliver, Brian, Celniker, Susan E.“…Drosophila melanogaster is one of the most well studied genetic model organisms, nonetheless its genome still contains unannotated coding and non-coding genes, transcripts, exons, and RNA editing sites. …”
Publicado 2010
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2“…Research using the model organism Drosophila melanogaster benefits from a wealth of molecular genetic resources and information useful for efficient in vivo experimentation. …”
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3por Yan, Han, Venkatesan, Kavitha, Beaver, John E., Klitgord, Niels, Yildirim, Muhammed A., Hao, Tong, Hill, David E., Cusick, Michael E., Perrimon, Norbert, Roth, Frederick P., Vidal, Marc“…Here we present a resource for Drosophila melanogaster gene function predictions. We trained function-specific classifiers to optimize the influence of different biological datasets for each functional category. …”
Publicado 2010
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4por Tang, Hong-Wen, Spirohn, Kerstin, Hu, Yanhui, Hao, Tong, Kovács, István A., Gao, Yue, Binari, Richard, Yang-Zhou, Donghui, Wan, Kenneth H., Bader, Joel S., Balcha, Dawit, Bian, Wenting, Booth, Benjamin W., Coté, Atina G., de Rouck, Steffi, Desbuleux, Alice, Goh, Kah Yong, Kim, Dae-Kyum, Knapp, Jennifer J., Lee, Wen Xing, Lemmens, Irma, Li, Cathleen, Li, Mian, Li, Roujia, Lim, Hyobin Julianne, Liu, Yifang, Luck, Katja, Markey, Dylan, Pollis, Carl, Rangarajan, Sudharshan, Rodiger, Jonathan, Schlabach, Sadie, Shen, Yun, Sheykhkarimli, Dayag, TeeKing, Bridget, Roth, Frederick P., Tavernier, Jan, Calderwood, Michael A., Hill, David E., Celniker, Susan E., Vidal, Marc, Perrimon, Norbert, Mohr, Stephanie E.“…We apply state-of-the-art methods to identify binary protein-protein interactions (PPIs) for Drosophila melanogaster. Four all-by-all yeast two-hybrid (Y2H) screens of > 10,000 Drosophila proteins result in the ‘FlyBi’ dataset of 8723 PPIs among 2939 proteins. …”
Publicado 2023
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5por Mohr, Stephanie E., Rudd, Kirstin, Hu, Yanhui, Song, Wei Roc, Gilly, Quentin, Buckner, Michael, Housden, Benjamin E., Kelley, Colleen, Zirin, Jonathan, Tao, Rong, Amador, Gabriel, Sierzputowska, Katarzyna, Comjean, Aram, Perrimon, NorbertEnlace del recurso
Publicado 2017
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6por Mohr, Stephanie E., Hu, Yanhui, Rudd, Kirstin, Buckner, Michael, Gilly, Quentin, Foster, Blake, Sierzputowska, Katarzyna, Comjean, Aram, Ye, Bing, Perrimon, NorbertEnlace del recurso
Publicado 2015
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7por Hu, Yanhui, Sopko, Richelle, Foos, Marianna, Kelley, Colleen, Flockhart, Ian, Ammeux, Noemie, Wang, Xiaowei, Perkins, Lizabeth, Perrimon, Norbert, Mohr, Stephanie E.“…In this work, we adapted and refined the algorithms used for the mammalian PrimerBank to design 45,417 primer pairs for 13,860 Drosophila melanogaster genes, with three or more primer pairs per gene. …”
Publicado 2013
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8“…We have established a Drosophila melanogaster model to study glycogen autophagy in skeletal muscles, using chloroquine (CQ) to simulate a vacuolar myopathy that is completely dependent on the core autophagy genes. …”
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9“…Drosophila melanogaster follicle stem cells are controlled by Wingless (Wg) ligands secreted 50 µm away, raising the question of how long-distance Wg spreading occurs. …”
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10“…Here, we re-examine this issue in the Drosophila melanogaster wing and notum using split-Gal4 co-expression analysis, multiplex somatic CRISPR, and double RNAi experiments. …”
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11por Vinayagam, Arunachalam, Zirin, Jonathan, Roesel, Charles, Hu, Yanhui, Yilmazel, Bahar, Samsonova, Anastasia A., Neumüller, Ralph A., Mohr, Stephanie E., Perrimon, Norbert“…We constructed a Drosophila melanogaster signed PPI network, consisting of 6,125 signed PPIs connecting 3,352 proteins that can be used to identify positive and negative regulators of signaling pathways and protein complexes. …”
Publicado 2013
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12“…Drosophila melanogaster has been adopted as one of the most-used model systems since it was first introduced by Thomas Morgan for the study of heredity in the early 20th century. …”
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13“…Age-related muscle dysfunction occurs to an even greater extent during the relatively short lifespan of the fruit fly Drosophila melanogaster. Studies in model organisms indicate that sarcopenia is driven by a combination of muscle tissue extrinsic and intrinsic factors, and that it fundamentally differs from the rapid atrophy of muscles observed following disuse and fasting. …”
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14por Parkhitko, Andrey A, Ramesh, Divya, Wang, Lin, Leshchiner, Dmitry, Filine, Elizabeth, Binari, Richard, Olsen, Abby L, Asara, John M, Cracan, Valentin, Rabinowitz, Joshua D, Brockmann, Axel, Perrimon, Norbert“…To identify metabolic pathways associated with aging, we analyzed age-dependent changes in the metabolomes of long-lived Drosophila melanogaster. Among the metabolites that changed, levels of tyrosine were increased with age in long-lived flies. …”
Publicado 2020
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15por Hu, Yanhui, Comjean, Aram, Rodiger, Jonathan, Liu, Yifang, Gao, Yue, Chung, Verena, Zirin, Jonathan, Perrimon, Norbert, Mohr, Stephanie E“…The FlyRNAi database at the Drosophila RNAi Screening Center and Transgenic RNAi Project (DRSC/TRiP) provides a suite of online resources that facilitate functional genomics studies with a special emphasis on Drosophila melanogaster. Currently, the database provides: gene-centric resources that facilitate ortholog mapping and mining of information about orthologs in common genetic model species; reagent-centric resources that help researchers identify RNAi and CRISPR sgRNA reagents or designs; and data-centric resources that facilitate visualization and mining of transcriptomics data, protein modification data, protein interactions, and more. …”
Publicado 2020
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16“…The organs and metabolic pathways involved in energy metabolism, and the process of ATP production from nutrients, are comparable between humans and Drosophila melanogaster. This level of conservation, together with the power of Drosophila genetics, makes the fly a very useful model system to study energy homeostasis. …”
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17“…Specifically, PPIRank is able to capture more true interactions and simultaneously less false positives in both Insulin and Hippo pathways of Drosophila Melanogaster.…”
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18por De Lella Ezcurra, Ana Laura, Bertolin, Agustina Paola, Kim, Kevin, Katz, Maximiliano Javier, Gándara, Lautaro, Misra, Tvisha, Luschnig, Stefan, Perrimon, Norbert, Melani, Mariana, Wappner, Pablo“…To identify microRNAs required for maximal HIF activity, we conducted an overexpression screen in Drosophila melanogaster, evaluating the induction of a HIF transcriptional reporter. miR-190 overexpression enhanced HIF-dependent biological responses, including terminal sprouting of the tracheal system, while in miR-190 loss of function embryos the hypoxic response was impaired. …”
Publicado 2016
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19por Bergwitz, Clemens, Wee, Mark J., Sinha, Sumi, Huang, Joanne, DeRobertis, Charles, Mensah, Lawrence B., Cohen, Jonathan, Friedman, Adam, Kulkarni, Meghana, Hu, Yanhui, Vinayagam, Arunachalam, Schnall-Levin, Michael, Berger, Bonnie, Perkins, Lizabeth A., Mohr, Stephanie E., Perrimon, Norbert“…Here, we establish Drosophila melanogaster as a model system for the study of phosphate effects. …”
Publicado 2013
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20por Brown, James B., Boley, Nathan, Eisman, Robert, May, Gemma E., Stoiber, Marcus H., Duff, Michael O., Booth, Ben W., Wen, Jiayu, Park, Soo, Suzuki, Ana Maria, Wan, Kenneth H., Yu, Charles, Zhang, Dayu, Carlson, Joseph W., Cherbas, Lucy, Eads, Brian D., Miller, David, Mockaitis, Keithanne, Roberts, Johnny, Davis, Carrie A., Frise, Erwin, Hammonds, Ann S., Olson, Sara, Shenker, Sol, Sturgill, David, Samsonova, Anastasia A., Weiszmann, Richard, Robinson, Garret, Hernandez, Juan, Andrews, Justen, Bickel, Peter J., Carninci, Piero, Cherbas, Peter, Gingeras, Thomas R., Hoskins, Roger A., Kaufman, Thomas C., Lai, Eric C., Oliver, Brian, Perrimon, Norbert, Graveley, Brenton R., Celniker, Susan E.“…We identified new genes, transcripts, and proteins using poly(A)+ RNA sequence from Drosophila melanogaster cultured cell lines, dissected organ systems, and environmental perturbations. …”
Publicado 2014
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