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1por Carper, Dana L., Weston, David J., Barde, Aditya, Timm, Collin M., Lu, Tse-Yuan, Burdick, Leah H., Jawdy, Sara S., Klingeman, Dawn M., Robeson, Michael S., Veach, Allison M., Cregger, Melissa A., Kalluri, Udaya C., Schadt, Christopher W., Podar, Mircea, Doktycz, Mitchel J., Pelletier, Dale A.“…We then explore a simplified microbiome, comprised of 10 strains representing abundant taxa from environmental samples, and tested for their ability to reproducibly colonize Populus root tissue. The 10-member simplified community was able to reproducibly colonize on Populus roots after 21 days, with some taxa found in surface-sterilized aboveground tissue. …”
Publicado 2021
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2por Dove, Nicholas C., Carrell, Alyssa A., Engle, Nancy L., Klingeman, Dawn M., Rodriguez, Miguel, Wahl, Toni, Tschaplinski, Timothy J., Muchero, Wellington, Schadt, Christopher W., Cregger, Melissa A.“…While Sphaerulina musiva is a well-characterized fungal pathogen which infects Populus tree species, an important wood fiber and biofuel feedstock, little is known about its systematic effects on the metabolome and microbiome of Populus. …”
Publicado 2022
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3por Dove, Nicholas C., Veach, Allison M., Muchero, Wellington, Wahl, Toni, Stegen, James C., Schadt, Christopher W., Cregger, Melissa A.“…However, while much is known about the initial microbiome assembly of grasses and agricultural crops, less is known about the initial microbiome of long-lived trees, such as poplar (Populus spp.). Thus, a greater understanding of initial plant microbiome assembly in an ecologically and economically important plant such as Populus is highly desirable. …”
Publicado 2021
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4por Jun, Se-Ran, Wassenaar, Trudy M., Nookaew, Intawat, Hauser, Loren, Wanchai, Visanu, Land, Miriam, Timm, Collin M., Lu, Tse-Yuan S., Schadt, Christopher W., Doktycz, Mitchel J., Pelletier, Dale A., Ussery, David W.“…Genes specific to Populus-associated subgroups were identified. Genes specific to subgroup 1 include several sensory systems that act in two-component signal transduction, a TonB-dependent receptor, and a phosphorelay sensor. …”
Publicado 2015
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5por Utturkar, Sagar M., Cude, W. Nathan, Robeson, Michael S., Yang, Zamin K., Klingeman, Dawn M., Land, Miriam L., Allman, Steve L., Lu, Tse-Yuan S., Brown, Steven D., Schadt, Christopher W., Podar, Mircea, Doktycz, Mitchel J., Pelletier, Dale A.“…Bacterial endophytes that colonize Populus trees contribute to nutrient acquisition, prime immunity responses, and directly or indirectly increase both above- and below-ground biomasses. …”
Publicado 2016
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6por Klingeman, Dawn M., Utturkar, Sagar, Lu, Tse-Yuan S., Schadt, Christopher W., Pelletier, Dale A., Brown, Steven D.“…The strains described in this study were isolated from the Populus trichocarpa endosphere and rhizosphere.…”
Publicado 2015
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7por Timm, Collin M., Carter, Kelsey R., Carrell, Alyssa A., Jun, Se-Ran, Jawdy, Sara S., Vélez, Jessica M., Gunter, Lee E., Yang, Zamin, Nookaew, Intawat, Engle, Nancy L., Lu, Tse-Yuan S., Schadt, Christopher W., Tschaplinski, Timothy J., Doktycz, Mitchel J., Tuskan, Gerald A., Pelletier, Dale A., Weston, David J.“…Using a microbiome inoculation strategy, we studied how the belowground microbiome of Populus deltoides changes in response to diverse environmental conditions, including water limitation, light limitation (shading), and metal toxicity. …”
Publicado 2018
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8por Shakya, Migun, Gottel, Neil, Castro, Hector, Yang, Zamin K., Gunter, Lee, Labbé, Jessy, Muchero, Wellington, Bonito, Gregory, Vilgalys, Rytas, Tuskan, Gerald, Podar, Mircea, Schadt, Christopher W.“…Here, we investigated relationships of bacterial and fungal communities in the rhizosphere and root endosphere of the riparian tree species Populus deltoides, and the influence of soil parameters, environmental properties (host phenotype and aboveground environmental settings), host plant genotype (Simple Sequence Repeat (SSR) markers), season (Spring vs. …”
Publicado 2013
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9por Timm, Collin M., Campbell, Alisha G., Utturkar, Sagar M., Jun, Se-Ran, Parales, Rebecca E., Tan, Watumesa A., Robeson, Michael S., Lu, Tse-Yuan S., Jawdy, Sara, Brown, Steven D., Ussery, David W., Schadt, Christopher W., Tuskan, Gerald A., Doktycz, Mitchel J., Weston, David J., Pelletier, Dale A.“…These isolates represent a single OTU and were collected from the rhizosphere and endosphere of Populus deltoides. While no traits were exclusive to either endosphere or rhizosphere P. fluorescens isolates, multiple pathways relevant for plant-bacterial interactions are enriched in endosphere isolate genomes. …”
Publicado 2015
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10por Veach, Allison M., Morris, Reese, Yip, Daniel Z., Yang, Zamin K., Engle, Nancy L., Cregger, Melissa A., Tschaplinski, Timothy J., Schadt, Christopher W.“…Salicylic acid is a ubiquitous phytohormone at low levels in most plants, yet are concentrated defense compounds in Populus, likely acting as a selective filter for rhizosphere microbiomes. …”
Publicado 2019
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11por Pelletier, Dale A., Burdick, Leah H., Podar, Mircea, Schadt, Christopher W., Kalluri, Udaya C.“…Larkinella sp. strain BK230, a heterotrophic bacterium of the phylum Bacteroidetes, was isolated from the roots of a field-grown eastern cottonwood tree (Populus deltoides) located in Georgia. The draft 7.27-Mb genome has a G+C content of 53.4% and contains 6,026 coding sequences, including 41 tRNA genes.…”
Publicado 2020
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12por Veach, Allison M., Morris, Reese, Yip, Daniel Z., Yang, Zamin K., Engle, Nancy L., Cregger, Melissa A., Tschaplinski, Timothy J., Schadt, Christopher W.Enlace del recurso
Publicado 2021
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13por Bible, Amber N., Fletcher, Sarah J., Pelletier, Dale A., Schadt, Christopher W., Jawdy, Sara S., Weston, David J., Engle, Nancy L., Tschaplinski, Timothy, Masyuko, Rachel, Polisetti, Sneha, Bohn, Paul W., Coutinho, Teresa A., Doktycz, Mitchel J., Morrell-Falvey, Jennifer L.“…YR343 is a motile, rod-shaped bacterium isolated from the roots of Populus deltoides that possesses the ability to solubilize phosphate and produce the phytohormone indole-3-acetic acid (IAA). …”
Publicado 2016
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14por Vélez, Jessica M., Morris, Reese M., Vilgalys, Rytas, Labbé, Jessy, Schadt, Christopher W.“…Here we describe a new isolate collection of 229 C. geophilum isolates from soils under Populus trichocarpa at 123 collection sites spanning a ~283 mile north-south transect in Western Washington and Oregon, USA (PNW). …”
Publicado 2021
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15Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungipor Liao, Hui-Ling, Bonito, Gregory, Hameed, Khalid, Wu, Steven H., Chen, Ko-Hsuan, Labbé, Jesse, Schadt, Christopher W., Tuskan, Gerald A., Martin, Francis, Kuo, Alan, Barry, Kerrie, Grigoriev, Igor V., Vilgalys, Rytas“…We used a common soil-plant bioassay experiment to study molecular plant-microbial interactions among rhizosphere communities associated with Pinus taeda (native host) and Populus trichocarpa (non-native host). Gene expression of interacting fungal and bacterial rhizosphere communities was compared among three plant-pairs: Populus growing with Populus, Populus with Pinus, and Pinus with Pinus. …”
Publicado 2021
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16por Carper, Dana L., Schadt, Christopher W., Burdick, Leah H., Kalluri, Udaya C., Pelletier, Dale A.“…A Gram-positive bacterium was isolated from the root of an eastern cottonwood tree (Populus deltoides) in Georgia and identified as a Tumebacillus species with 99% 16S rRNA nucleotide identity to Tumebacillus avium. …”
Publicado 2020
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17por Karpinets, Tatiana V., Gopalakrishnan, Vancheswaran, Wargo, Jennifer, Futreal, Andrew P., Schadt, Christopher W., Zhang, Jianhua“…We tested and validated the framework on two types of microbiomes, of human body sites and that of the Populus tree root systems. We show that in both studies the associations of OTUs can separate samples according to environmental or physiological characteristics of the studied systems.…”
Publicado 2018
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18por Ware, Ian M., Van Nuland, Michael E., Yang, Zamin K., Schadt, Christopher W., Schweitzer, Jennifer A., Bailey, Joseph K.“…Here we hypothesize and show: 1) the degree to which tree genotypes condition their soil microbiomes varies by population across the geographic distribution of a widespread riparian tree, Populus angustifolia; 2) geographic dissimilarity in soil microbiomes among populations is influenced by both abiotic and biotic environmental variation; and 3) soil microbiomes that vary in response to abiotic and biotic factors can change plant foliar phenology. …”
Publicado 2021
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19por Veach, Allison M., Chen, Huaihai, Yang, Zamin K., Labbe, Audrey D., Engle, Nancy L., Tschaplinski, Timothy J., Schadt, Christopher W., Cregger, Melissa A.“…Drought stress negatively impacts microbial activity, but the magnitude of stress responses is likely dependent on a diversity of belowground interactions. Populus trichocarpa individuals and no-plant bulk soils were exposed to extended drought (∼0.03% gravimetric water content [GWC] after 12 days), rewet, and a 12-day “recovery” period to determine the effects of plant presence in mediating soil microbiome stability to water stress. …”
Publicado 2020
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20por Garcia, Benjamin J., Simha, Ramanuja, Garvin, Michael, Furches, Anna, Jones, Piet, Gazolla, Joao G.F.M., Hyatt, P. Doug, Schadt, Christopher W., Pelletier, Dale, Jacobson, Daniel“…To illustrate the breadth of our utility for classifying metagenome viruses, we analyzed data from a plant metagenome study identifying genotypic and compartment specific differences between two Populus genotypes in three different compartments. …”
Publicado 2021
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