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1od Benham, Phred M, Cicero, Carla, Escalona, Merly, Beraut, Eric, Marimuthu, Mohan P A, Nguyen, Oanh, Nachman, Michael W, Bowie, Rauri C K“...The California quail (Callipepla californica) is an iconic native bird of scrub and oak woodlands in California and the Baja Peninsula of Mexico. ...”
Izdano 2023
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2od Paggeot, Lisa X, DeBiasse, Melissa B, Escalona, Merly, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Sahasrabudhe, Ruta, Dawson, Michael N“...The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. ...”
Izdano 2022
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3od Fitz-Gibbon, Sorel, Mead, Alayna, O’Donnell, Scott, Li, Zhi-Zhong, Escalona, Merly, Beraut, Eric, Sacco, Samuel, Marimuthu, Mohan P A, Nguyen, Oanh, Sork, Victoria L“...Juglans californica, California walnut, is a vulnerable small tree that is locally abundant but restricted to woodland and chaparral habitats of Southern California threatened by urbanization and land use change. ...”
Izdano 2023
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4od DeRaad, Devon A, Escalona, Merly, Benham, Phred M, Marimuthu, Mohan P A, Sahasrabudhe, Ruta M, Nguyen, Oanh, Chumchim, Noravit, Beraut, Eric, Fairbairn, Colin W, Seligmann, William, Bowie, Rauri C K, Cicero, Carla, McCormack, John E, Wayne, Robert K“...We extracted high molecular weight genomic DNA from a female California Scrub-Jay from northern California and generated PacBio HiFi long-read data and Omni-C chromatin conformation capture data. ...”
Izdano 2023
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5od Bernardi, Giacomo, DeBiasse, Melissa, Escalona, Merly, Marimuthu, Mohan P A, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Miller, Courtney, Toffelmier, Erin, Shaffer, H Bradley“...Keystone species are known to play a critical role in kelp forest health, including the well-known killer whales, sea otter, sea urchin, kelp trophic cascade in the Aleutian Islands, Alaska, USA. In California, a major player in the regulation of sea urchin abundance, and in turn, the health of kelp forests ecosystems, is a large wrasse, the California Sheephead, Semicossyphus pulcher. ...”
Izdano 2022
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6od Bernardi, Giacomo, Toy, Jason A, Escalona, Merly, Marimuthu, Mohan P A, Sahasrabudhe, Ruta, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Toffelmier, Erin, Miller, Courtney, Shaffer, H Bradley“...This life history trait translates into limited dispersal, strong population structure, and an unusually strong potential for local adaptation in a marine fish. As part of the California Conservation Genomics Project (CCGP), we sequenced the genome of the Black Surfperch, Embiotoca jacksoni, to establish a genomic model for understanding phylogeographic patterns of marine organisms in California. ...”
Izdano 2022
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7od Chaturvedi, Samridhi, Escalona, Merly, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Fairbairn, Colin W, Seligmann, William, Miller, Courtney, Bradley Shaffer, H, Whiteman, Noah K“...The California Pipevine Swallowtail Butterfly, Battus philenor hirsuta, and its host plant, the California Pipevine or Dutchman’s Pipe, Aristolochia californica Torr., are an important California endemic species pair. ...”
Izdano 2023
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8od Wright, Daniel B, Escalona, Merly, Marimuthu, Mohan P A, Sahasrabudhe, Ruta, Nguyen, Oanh, Sacco, Samuel, Beraut, Eric, Toffelmier, Erin, Miller, Courtney, Shaffer, H Bradley, Bernardi, Giacomo, German, Donovan P“...Pricklebacks (Family Stichaeidae) are generally cold-temperate fishes most commonly found in the north Pacific. As part of the California Conservation Genomics Project (CCGP), we sequenced the genome of the Monkeyface Prickleback, Cebidichthys violaceus, to establish a genomic model for understanding phylogeographic patterns of marine organisms in California. ...”
Izdano 2022
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9od Kieran Blair, Shannon Rose, Schreier, Andrea, Escalona, Merly, Finger, Amanda J, Joslin, Shannon E K, Sahasrabudhe, Ruta, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Morris, Emily Reister, Mangelson, Hayley, Hull, Joshua“...Anostracan fairy shrimp are facing global declines with 3 species in California on the Endangered Species list. This species was included in the California Conservation Genomics Project to provide an easily accessible reference genome, and to provide whole-genome resources for a generalist species, which may lead to new insights into Anostracan resiliency in the face of climate change. ...”
Izdano 2022
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10od Adams, Seira A, Graham, Natalie R, Holmquist, Anna J, Sheffer, Monica M, Steigerwald, Emma C, Sahasrabudhe, Ruta, Nguyen, Oanh, Beraut, Eric, Fairbairn, Colin, Sacco, Samuel, Seligmann, William, Escalona, Merly, Shaffer, H Bradley, Toffelmier, Erin, Gillespie, Rosemary G“...Riparian ecosystems in California provide refuge to many native and vulnerable species within a xeric landscape. ...”
Izdano 2023
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11od Kieran Blair, Shannon Rose, Hull, Joshua, Escalona, Merly, Finger, Amanda, Joslin, Shannon E K, Sahasrabudhe, Ruta, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Morris, Emily Reister, Velazquez, Samantha, Schreier, Andrea“...L. packardi is a key food source for other conserved California species including the California Tiger Salamander Ambystoma californiense. ...”
Izdano 2022
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12od Hall, Laurie A, Wang, Ian J, Escalona, Merly, Beraut, Eric, Sacco, Samuel, Sahasrabudhe, Ruta, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Beissinger, Steven R“...Two of its five subspecies breed in North America: the Eastern black rail (L. j. jamaicensis), found primarily in the southern and mid-Atlantic states, and the California black rail (L. j. coturniculus), inhabiting California and Arizona, are recognized across the highly disjunct distribution. ...”
Izdano 2023
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13od Bishop, Anusha P, Westeen, Erin P, Yuan, Michael L, Escalona, Merly, Beraut, Eric, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Chumchim, Noravit, Toffelmier, Erin, Fisher, Robert N, Shaffer, H. Bradley, Wang, Ian J“...The western fence lizard, Sceloporus occidentalis, is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. ...”
Izdano 2023
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14od Adams, Julia N, Escalona, Merly, Marimuthu, Mohan P A, Fairbairn, Colin W, Beraut, Eric, Seligmann, William, Nguyen, Oanh, Chumchim, Noravit, Stajich, Jason E“...Lichen thallus tissue was collected from Pinkham Canyon in Joshua Tree National Park, California and deposited in the UC Riverside herbarium under accession #295874. ...”
Izdano 2023
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15od Ballare, Kimberly M, Escalona, Merly, Barr, Kelly, Seligmann, William, Sacco, Samuel, Sahasrabudhe, Ruta Madhusudan, Nguyen, Oanh, Wyckoff, Christy, Smith, Thomas B, Shapiro, Beth“...The tricolored blackbird, Agelaius tricolor, is a gregarious species that forms enormous breeding and foraging colonies in wetland and agricultural habitats, primarily in California, USA. Once extremely abundant, species numbers have declined dramatically in the past century, largely due to losses of breeding and foraging habitats. ...”
Izdano 2022
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16od Cornwell, Brendan H, Beraut, Eric, Fairbairn, Colin, Nguyen, Oanh, Marimuthu, Mohan P A, Escalona, Merly, Toffelmier, Erin“...The sunburst anemone Anthopleura sola is an abundant species inhabiting the intertidal zone of coastal California. Historically, this species has extended from Baja California, Mexico to as far north as Monterey Bay, CA. ...”
Izdano 2022
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17od Huang, Yi, Escalona, Merly, Morrison, Glen, Marimuthu, Mohan P A, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Litt, Amy“...Arctostaphylos (Ericaceae) species, commonly known as manzanitas, are an invaluable fire-adapted chaparral clade in the California Floristic Province (CFP), a world biodiversity hotspot on the west coast of North America. ...”
Izdano 2021
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18od Anghel, Ioana G, Jacobs, Sarah J, Escalona, Merly, Marimuthu, Mohan P A, Fairbairn, Colin W, Beraut, Eric, Nguyen, Oanh, Toffelmier, Erin, Shaffer, H Bradley, Zapata, Felipe“...Despite the importance of L. parryae in the development of landscape genetics and phylogeography, there are no genomic resources available for the species. Through the California Conservation Genomics Project, we assembled the first genome in the genus Linanthus. ...”
Izdano 2022
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19od Griffiths, Joanna S, Sahasrabudhe, Ruta M, Marimuthu, Mohan P A, Chumchim, Noravit, Nguyen, Oanh H, Beraut, Eric, Escalona, Merly, Whitehead, Andrew“...Here, we present a new red abalone reference genome as part of the California Conservation Genomics Project (CCGP). Following the CCGP genome strategy, we used Pacific Biosciences HiFi long reads and Dovetail Omni-C data to generate a scaffold-level assembly. ...”
Izdano 2022
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20od Benham, Phred M, Cicero, Carla, DeRaad, Devon A, McCormack, John E, Wayne, Robert K, Escalona, Merly, Beraut, Eric, Marimuthu, Mohan P A, Nguyen, Oanh, Nachman, Michael W, Bowie, Rauri C K“...Here, we report a draft reference assembly for the species generated from PacBio HiFi long-read and Omni-C chromatin-proximity sequencing data as part of the California Conservation Genomics Project (CCGP). Sequenced reads were assembled into 352 scaffolds totaling 1.16 Gb in length. ...”
Izdano 2023
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