Gene-based microbiome representation enhances host phenotype classification

por Deschênes, Thomas, Tohoundjona, Fred Wilfried Elom, Plante, Pier-Luc, Di Marzo, Vincenzo, Raymond, Frédéric
Publicado 2023

Predicting variable gene content in Escherichia coli using conserved genes

por Nguyen, Marcus, Elmore, Zachary, Ihle, Clay, Moen, Francesco S., Slater, Adam D., Turner, Benjamin N., Parrello, Bruce, Best, Aaron A., Davis, James J.
Publicado 2023

Bacteriophage populations mirror those of bacterial pathogens at sites of infection

por Haddock, N. L., Barkal, L. J., Bollyky, P. L.
Publicado 2023

A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance

por Sweeny, Amy R., Lemon, Hannah, Ibrahim, Anan, Watt, Kathryn A., Wilson, Kenneth, Childs, Dylan Z., Nussey, Daniel H., Free, Andrew, McNally, Luke
Publicado 2023

A standardized quantitative analysis strategy for stable isotope probing metagenomics

por Vyshenska, Dariia, Sampara, Pranav, Singh, Kanwar, Tomatsu, Andy, Kauffman, W. Berkeley, Nuccio, Erin E., Blazewicz, Steven J., Pett-Ridge, Jennifer, Louie, Katherine B., Varghese, Neha, Kellom, Matthew, Clum, Alicia, Riley, Robert, Roux, Simon, Eloe-Fadrosh, Emiley A., Ziels, Ryan M., Malmstrom, Rex R.
Publicado 2023

Melanization slows the rapid movement of fungal necromass carbon and nitrogen into both bacterial and fungal decomposer communities and soils

por Maillard, François, Michaud, Talia J., See, Craig R., DeLancey, Lang C., Blazewicz, Steven J., Kimbrel, Jeffrey A., Pett-Ridge, Jennifer, Kennedy, Peter G.
Publicado 2023

Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome

por Lee, Elliot M., Srinivasan, Sujatha, Purvine, Samuel O., Fiedler, Tina L., Leiser, Owen P., Proll, Sean C., Minot, Samuel S., Deatherage Kaiser, Brooke L., Fredricks, David N.
Publicado 2023

The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method

por Bucci, Vanni, Ward, Doyle V., Bhattarai, Shakti, Rojas-Correa, Mayra, Purkayastha, Ayan, Holler, Devon, Qu, Ming Da, Mitchell, William G., Yang, Jason, Fountain, Samuel, Zeamer, Abigail, Forconi, Catherine S., Fujimori, Gavin, Odwar, Boaz, Cawley, Caitlin, Moormann, Ann M., Wessolossky, Mireya, Maldonado-Contreras, Ana
Publicado 2023

Intensive care unit sinks are persistently colonized with multidrug resistant bacteria and mobilizable, resistance-conferring plasmids

por Diorio-Toth, Luke, Wallace, Meghan A., Farnsworth, Christopher W., Wang, Bin, Gul, Danish, Kwon, Jennie H., Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam
Publicado 2023

Unraveling the roles of coastal bacterial consortia in degradation of various lignocellulosic substrates

por Peng, Qiannan, Lin, Lu, Tu, Qichao, Wang, Xiaopeng, Zhou, Yueyue, Chen, Jiyu, Jiao, Nianzhi, Zhou, Jizhong
Publicado 2023

Integrated multi-omic analyses provide insight into colon adenoma susceptibility modulation by the gut microbiota

por Busi, Susheel Bhanu, Lei, Zhentian, Sumner, Lloyd W., Amos-Landgraf, James M.
Publicado 2023

The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1 cells

por Meng, Yuan-Yuan, Peng, Jun-Hui, Qian, Jiang, Fei, Fu-Lin, Guo, Ying-Ying, Pan, Ying-Jie, Zhao, Yong, Liu, Hai-Quan
Publicado 2023

Transcriptome architecture of the three main lineages of agrobacteria

por Waldburger, Lucas, Thompson, Mitchell G., Weisberg, Alexandra J., Lee, Namil, Chang, Jeff H., Keasling, Jay D., Shih, Patrick M.
Publicado 2023

Correction for Dooling et al., “The Effect of Limosilactobacillus reuteri on Social Behavior Is Independent of the Adaptive Immune System”

por Dooling, Sean W., Sgritta, Martina, Wang, I-Ching, Rocha Faria Duque, Ana Luiza, Costa-Mattioli, Mauro
Publicado 2023

The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status

por Vargas-Robles, Daniela, Romaguera, Josefina, Alvarado-Velez, Ian, Tosado-Rodríguez, Eduardo, Dominicci-Maura, Anelisse, Sanchez, Maria, Wiggin, Kara J., Martinez-Ferrer, Magaly, Gilbert, Jack A., Forney, Larry J., Godoy-Vitorino, Filipa
Publicado 2023

Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation

por Breusing, Corinna, Xiao, Yao, Russell, Shelbi L., Corbett-Detig, Russell B., Li, Sixuan, Sun, Jin, Chen, Chong, Lan, Yi, Qian, Pei-Yuan, Beinart, Roxanne A.
Publicado 2023

Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains TCH1516 and LAC

por Gao, Ye, Poudel, Saugat, Seif, Yara, Shen, Zeyang, Palsson, Bernhard O.
Publicado 2023

Diversity, composition, and networking of saliva microbiota distinguish the severity of COVID-19 episodes as revealed by an analysis of 16S rRNA variable V1-V3 region sequences

por Larios Serrato, Violeta, Meza, Beatriz, Gonzalez-Torres, Carolina, Gaytan-Cervantes, Javier, González Ibarra, Joaquín, Santacruz Tinoco, Clara Esperanza, Anguiano Hernández, Yu-Mei, Martínez Miguel, Bernardo, Cázarez Cortazar, Allison, Sarquiz Martínez, Brenda, Alvarado Yaah, Julio Elias, Mendoza Pérez, Antonina Reyna, Palma Herrera, Juan José, García Soto, Leticia Margarita, Chávez Rojas, Adriana Inés, Bravo Mateos, Guillermo, Samano Marquez, Gabriel, Grajales Muñiz, Concepción, Torres, Javier
Publicado 2023

Hemin availability induces coordinated DNA methylation and gene expression changes in Porphyromonas gingivalis

por Costeira, Ricardo, Aduse-Opoku, Joseph, Vernon, Jon J., Rodriguez-Algarra, Francisco, Joseph, Susan, Devine, Deirdre A., Marsh, Philip D., Rakyan, Vardhman, Curtis, Michael A., Bell, Jordana T.
Publicado 2023

Oral microbial communities in children, caregivers, and associations with salivary biomeasures and environmental tobacco smoke exposure

por Rothman, Jason A., Riis, Jenna L., Hamilton, Katrina R., Blair, Clancy, Granger, Douglas A., Whiteson, Katrine L.
Publicado 2023