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3521por Huang, Weidong, Xie, Xiufeng, Huo, Lizhi, Liang, Xinyue, Wang, Xingmin, Chen, Xiaosheng“…We also downloaded 870 COI barcode sequences (658 bp) from GenBank and BOLD database, belonging to 108 species within 46 genera, to assess the optimum genetic distance threshold and compare four methods of species delimitation (GMYC, bPTP, BIN and ABGD) to determine the most accurate approach for the family. …”
Publicado 2020
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3522por Sherwood, Alison R., Huisman, John M., Paiano, Monica O., Williams, Taylor M., Kosaki, Randall K., Smith, Celia M., Giuseffi, Louise, Spalding, Heather L.“…DNA sequence analyses of the mitochondrial COI barcode marker, the plastidial rbcL gene, and the nuclear SSU gene confirmed its genus-level placement and demonstrated that this alga was unique compared to all other available sequences. …”
Publicado 2020
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3523por Bernal, Julio S., Dávila‐Flores, Amanda M., Medina, Raul F., Chen, Yolanda H., Harrison, Kyle E., Berrier, Kimberly A.“…We used AFLP markers and mitochondrial COI sequences to assess population genetic structuring and haplotype relationships among corn leafhopper samples from maize and its wild relative Zea diploperennis from multiple locations in Mexico and Argentina. …”
Publicado 2018
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3524por Maniei, Fatemeh, Amiri Moghaddam, Jamshid, Crüsemann, Max, Beemelmanns, Christine, König, Gabriele M., Wägele, Heike“…Based on the ABGD test and haplotype networking using COI gene sequences of Peronia specimens, nine well-supported clades were found. …”
Publicado 2020
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3525por Azevedo, Joana, Antunes, Jorge T., Machado, André M., Vasconcelos, Vitor, Leão, Pedro N., Froufe, Elsa“…Fouling organisms were identified by combining morpho-taxonomy identification with community DNA metabarcoding using multiple markers (16S rRNA, 18S rRNA, 23S rRNA, and COI genes). The dominant colonizers found at this location were hard foulers, namely barnacles and mussels, while other groups of organisms such as cnidarians, bryozoans, and ascidians were also abundant. …”
Publicado 2020
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3526“…In the course of a study of Pseudaxine trachuri Parona & Perugia 1890, we found specimens with structures resembling “multiple vaginae”; we compared them with specimens without vaginae in terms of both morphology and molecular characterisitics (COI barcode), and found that they belonged to the same species. …”
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3527“…Molecular analyses used coI, cytb, 12S and 16S mitochondrial genes, examining nucleotide diversity, haplotype diversity, genetic distance, and delimitation of possible multiple species through the Generalized Mixed Yule Coalescent (GMYC) method. …”
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3528por Wattier, Remi, Mamos, Tomasz, Copilaş-Ciocianu, Denis, Jelić, Mišel, Ollivier, Anthony, Chaumot, Arnaud, Danger, Michael, Felten, Vincent, Piscart, Christophe, Žganec, Krešimir, Rewicz, Tomasz, Wysocka, Anna, Rigaud, Thierry, Grabowski, Michał“…It is extensively used in both applied and basic types of research, including biodiversity assessments, ecotoxicology and evolutionary ecology. Based on COI barcodes of 4926 individuals from 498 sampling sites in 19 European countries, the present paper shows (1) hyper cryptic diversity, ranging from 84 to 152 Molecular Operational Taxonomic Units, (2) ancient diversification starting already 26 Mya in the Oligocene, and (3) high level of lineage syntopy. …”
Publicado 2020
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3529por Dayrat, Benoît, Goulding, Tricia C., Apte, Deepak, Aslam, Sadar, Bourke, Adam, Comendador, Joseph, Khalil, Munawar, Ngô, Xuân Quảng, Tan, Siong Kiat, Tan, Shau Hwai“…Nine species are supported by mitochondrial (COI and 16S) and nuclear (ITS2 and 28S) sequences as well as comparative anatomy. …”
Publicado 2020
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3530por Bozáňová, Jana, Čiamporová Zat’ovičová, Zuzana, Čiampor Jr, Fedor, Mamos, Tomasz, Grabowski, Michał“…Our study aims to compare population genetic structure and molecular diversity of two related and commonly co-occurring riffle beetles, Elmis aenea (PWJ Müller, 1806) and Limnius perrisi (Dufour, 1843) in the springs and streams of the W Carpathians using the mitochondrial DNA barcoding fragment of the cytochrome c oxidase subunit I gene (COI). The relatively stable thermal and chemical conditions of springs throughout unfavourable climatic settings make these highly specific lotic systems potentially ideal for a long-term survival of some aquatic biota. …”
Publicado 2020
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3531por Davidov, Keren, Iankelevich-Kounio, Evgenia, Yakovenko, Iryna, Koucherov, Yuri, Rubin-Blum, Maxim, Oren, Matan“…We targeted the full 1.5 kb-long 16S rRNA gene for bacteria and 0.4–0.8 kb-long regions within the 18S rRNA, ITS, tufA and COI loci for eukaryotes. The taxonomic barcodes were sequenced using Oxford Nanopore Technology with multiplexing on a single MinION flow cell. …”
Publicado 2020
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3532“…In order to explore possible mechanisms of local population outbreaks and characterize the genetic diversity and genetic structure of M. raddei across its range in China, three mitochondrial genes (COI, Cytb, and COII) were sequenced and analyzed for seven M. raddei populations collected from six provinces in China. …”
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3533“…The response of the defence genes PR-10a, Catalase, COI1-1, COII-2 and HRin1 was upregulated by Meja, SA and Meja + SA treatments, but Meja induced high level of expression compared to SA and Meja + SA at 1, 2, and 3 weeks in roots and coleoptiles, respectively. …”
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3534“…Keys to the genera and species of Caribbean Archipini, distribution maps, a regional checklist, and Neighbor-joining and Maximum Likelihood trees based on COI barcode data are provided. Phylogenetic relationships among Caribbean Archipini are briefly discussed.…”
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3535por Yashwanth, B. S., Goswami, Mukunda, Kooloth Valappil, Rajendran, Thakuria, Dimpal, Chaudhari, Aparna“…The cell line was authenticated by sequencing mitochondrial cytochrome C oxidase subunit I (COI) and 16S rRNA genes. The growth rate of the OCF cell line was maximum in medium containing 20% FBS and 1% of 0.2 M NaCl at 28 °C. …”
Publicado 2020
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3536por Rees, David J., Poulsen, Jan Y., Sutton, Tracey T., Costa, Paulo A. S., Landaeta, Mauricio F.“…We obtained new sequences from mitochondrial COI and nuclear ITS-2 from multiple locations worldwide, representing 10 described species plus an unknown central South Pacific taxon. …”
Publicado 2020
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3537por Madrid, Ramón Soto, Sychra, Oldřich, Benedick, Suzan, Edwards, David P., Efeykin, Boris D., Fandrem, Marte, Haugaasen, Torbjørn, Teterina, Anastasia, Tomassi, Suzanne, Tolstenkov, Oleg“…The phylogenetic relationships of lice were investigated by analyzing the partial mitochondrial cytochrome oxidase I (COI) and the nuclear elongation factor alpha (EF-1α) genes sequences of the species. …”
Publicado 2020
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3538por Siriwut, Warut, Jeratthitikul, Ekgachai, Panha, Somsak, Chanabun, Ratmanee, Sutcharit, Chirasak“…Molecular phylogenetic analyses based on sequences of three molecular markers (COI, 16S and 18S rRNA) were performed. The phylogenetic results agreed with morphological identifications, and indicated the presence of at least nine putative taxa. …”
Publicado 2020
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3539por Boissin, Emilie, Neglia, Valentina, Baksay, Sandra, Micu, Dragos, Bat, Levent, Topaloglu, Bulent, Todorova, Valentina, Panayotova, Marina, Kruschel, Claudia, Milchakova, Nataliya, Voutsinas, Emanuela, Beqiraj, Sajmir, Nasto, Ina, Aglieri, Giorgio, Taviani, Marco, Zane, Lorenzo, Planes, Serge“…Here, we combined analyses of the mitochondrial COI gene and 11 microsatellite markers to investigate both past demographic history and contemporaneous genetic structure in the native area of the gastropod Tritia neritea, using Bayesian skyline plots (BSP), multivariate analyses and Bayesian clustering. …”
Publicado 2020
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3540por Borges, Adolfo, Rojas de Arias, Antonieta, de Almeida Lima, Sabrina, Lomonte, Bruno, Díaz, Cecilia, Chávez-Olórtegui, Carlos, Graham, Matthew R., Kalapothakis, Evanguedes, Coronel, Cathia, de Roodt, Adolfo R.“…A time-calibrated molecular phylogeny of mitochondrial COI sequences revealed a significant (8.14%) genetic differentiation between the Argentinean and Paraguayan populations, which appeared to have diverged between the mid Miocene and early Pliocene. …”
Publicado 2020
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