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  1. 2281
    “…In all experiments conducted using a single CPU, the ntEdit pipeline executed in <14 s and <3 m, on average, on E.coli and C.elegans, respectively. …”
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    ntEdit: scalable genome sequence polishing
  2. 2282
    “…The software includes novel correction routines for uneven illumination and sample jitter in addition to CPU/GPU accelerated reconstruction for large datasets. …”
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    OptiJ: Open-source optical projection tomography of large organ samples
  3. 2283
    “…Eleven of these genes harbor polymorphisms associated with the precipitation gradient, including orthologs of genes that regulate seed size in other cereals. With FarmCPU, 13 significant SNPs were identified, including one at an a priori candidate gene. …”
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    Genomic signatures of seed mass adaptation to global precipitation gradients in sorghum
  4. 2284
    “…The software packages using long-read sequencing data required fewer CPU cores and less memory and ran faster than those using NGS data. …”
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    Comparison of multiple algorithms to reliably detect structural variants in pears
  5. 2285
    por Ge, Lihong, Liu, Zhichao, Tian, Yang
    Publicado 2020
    “…Using this powerful tool, it was clear that the level of BACE1 was different in various brain regions of AD mouse such as S1BF, CPu, LD, and CA1. The up-regulation of BACE1 was observed especially in the regions S1BF and CA1 in AD mouse brain. …”
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    A novel two-photon ratiometric fluorescent probe for imaging and sensing of BACE1 in different regions of AD mouse brain
  6. 2286
    “…Regarding the basecaller, we added the support for the newest official basecaller, Guppy, which can support both GPU and CPU. In addition, multiple optimizations, related to multiprocessing control, memory and storage management, have been implemented to make DS1.5 a much more amenable and lighter simulator than DS1.0. …”
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    DeepSimulator1.5: a more powerful, quicker and lighter simulator for Nanopore sequencing
  7. 2287
    “…A genome-wide association study (GWAS) was carried out implementing the FarmCPU model to control the population structure and kinship, and resulted in the identification of 29 marker-trait associations (MTAs) with significant associations for traits viz. …”
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    Genome-Wide Association Study Reveals Novel Marker-Trait Associations (MTAs) Governing the Localization of Fe and Zn in the Rice Grain
  8. 2288
    “…On another large dataset of [Formula: see text]281K instances corresponding to [Formula: see text]30K queries from diverse domains, our distilled 174 MB model provides an NDCG@1 of 75.08 with a CPU runtime of mere 31 ms establishing a new state-of-the-art for FAQ answering.…”
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    Optimized Transformer Models for FAQ Answering
  9. 2289
    “…FUNDING: This work was funded by the National Natural Science Foundation of China (No. 81673483, 81803591); National Science and Technology Major Project Foundation of China (2019ZX09721001-004-005); National Key Research and Development Program of China (2018YFA0902000); "Double First-Class" University project (CPU2018GF/GY16); Natural Science Foundation of Jiangsu Province of China (No. …”
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    Antimicrobial and antibiofilm activity of the EeCentrocin 1 derived peptide EC1-17KV via membrane disruption
  10. 2290
    “…In order to evaluate its performance a comparison is performed between the original single CPU version of MetaCache, the Spark version and the MPI version we are introducing. …”
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    Big Data in metagenomics: Apache Spark vs MPI
  11. 2291
    “…By reliably and rapidly narrowing down target interactions, (no more than 1.5 hours per interface on a laptop with Intel Core i5-2500K @ 3.2 Ghz CPU and 8GB of RAM) our predictions can inform and reduce time-consuming in-vitro and in-vivo experiments, or more computationally intensive in-silico analyses.…”
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    Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis
  12. 2292
    “…The association analyses were conducted by using the fixed and random model Circulating Probability Unification (FarmCPU) method. A total of ten single-nucleotide polymorphisms (SNPs) were detected above the genome-wide significant threshold (p < 4.0 × 10(−7)), including six located in previously reported quantitative traits locus (QTL) regions. …”
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    GWAS-Based Identification of New Loci for Milk Yield, Fat, and Protein in Holstein Cattle
  13. 2293
    “…A set of 190 significant marker-associations identified by fixed and random model circulating probability unification (FarmCPU) were considered for searching resistance candidate genes. …”
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    Multiple Genome Wide Association Mapping Models Identify Quantitative Trait Nucleotides for Brown Planthopper (Nilaparvata lugens) Resistance in MAGIC Indica Population of Rice
  14. 2294
    por Förster, Arno, Visscher, Lucas
    Publicado 2020
    “…Also owing to a very small prefactor, a G(0)W(0) calculation for the largest of these clusters takes only 240 CPU hours with these settings. We assess the accuracy of our algorithm for HOMO and LUMO energies in the GW100 database. …”
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    Low-Order Scaling G(0)W(0) by Pair Atomic Density Fitting
  15. 2295
    “…In addition to assessing accuracy, we analyzed the CPU cost and performance for each method using a variety of physico-chemical structural features. …”
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    Assessment of software methods for estimating protein-protein relative binding affinities
  16. 2296
    “…We used BiG-SLiCE to analyze 1,225,071 BGCs collected from 209,206 publicly available microbial genomes and metagenome-assembled genomes within 10 days on a typical 36-core CPU server. We demonstrate the utility of such analyses by reconstructing a global map of secondary metabolic diversity across taxonomy to identify uncharted biosynthetic potential. …”
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    BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
  17. 2297
    “…Furthermore, we test the playing strength of CrazyAra on CPU against all participants of the second Crazyhouse Computer Championships 2017, winning against twelve of the thirteen participants. …”
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    Learning to Play the Chess Variant Crazyhouse Above World Champion Level With Deep Neural Networks and Human Data
  18. 2298
    “…We found that SSODCSC produces better values for the sum of intra-cluster distances, the average CPU time per iteration (in seconds), accuracy, the F-measure, and the average silhouette coefficient as compared with the K-means and other nature-inspired techniques. …”
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    A novel variant of social spider optimization using single centroid representation and enhanced mating for data clustering
  19. 2299
    por Kim, Yewon, Yeom, Yongjin
    Publicado 2021
    “…Our GPU-based implementation excluded one statistical test, which is not suitable for GPU implementation. We propose a hybrid CPU/GPU implementation that consists of our GPU-based program and the excluded statistical test that runs using OpenMP. …”
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    Accelerated implementation for testing IID assumption of NIST SP 800-90B using GPU
  20. 2300
    “…Runtime tests show that MSFragger and IonQuant can fully process a typical two-hour PASEF run in under 70 min on a typical desktop (6 CPU cores, 32 GB RAM), significantly faster than other tools. …”
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    Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant
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