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21por Das, Rhiju, Kretsch, Rachael C., Simpkin, Adam J., Mulvaney, Thomas, Pham, Phillip, Rangan, Ramya, Bu, Fan, Keegan, Ronan M., Topf, Maya, Rigden, Daniel J., Miao, Zhichao, Westhof, Eric“…Here, we report assessments of RNA structure predictions in CASP15, the first CASP exercise that involved RNA structure modeling. …”
Publicado 2023
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22“…Using a Kaplan-Meier plotter online database, the predictive prognostic significance of the expression of 12 CASPs genes (CASP1, CASP2, CASP3, CASP4, CASP5, CASP6, CASP7, CASP8, CASP9, CASP10, CASP12 and CASP14) to overall survival (OS) in different clinicopathological features, including Lauren classification, pathological stages, therapies employed and differentiation in gastric cancer patients was explored. …”
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23“…In this article, we describe our efforts in contact prediction in the CASP13 experiment. We employed a new deep learning‐based contact prediction tool, DeepMetaPSICOV (or DMP for short), together with new methods and data sources for alignment generation. …”
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24por Zheng, Zhaoshi, Liu, Songyan, Wang, Chuheng, Wang, Chunhui, Tang, Dong, Shi, Yuqing, Han, Xuemei“…Elevated CASP7 was observed in IS, acting as a key apoptotic mediator in the development of IS. …”
Publicado 2019
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25por Wang, Zhigang, Chen, Zhiwei, Zhang, Xiang, Wei, Qiuxing, Xin, Yafeng, Zhang, Baolei, Liu, Fuhang, Xia, Jixing“…The Casparian strip domain protein 1 (OsCASP1) is necessary for the formation of the Casparian strip (CS) in the rice endodermis. …”
Publicado 2021
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26“…Caspase1 (CASP1) is a gene that encodes multiple proteins related to cell death. …”
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27por Alexander, Leila T., Lepore, Rosalba, Kryshtafovych, Andriy, Adamopoulos, Athanassios, Alahuhta, Markus, Arvin, Ann M., Bomble, Yannick J., Böttcher, Bettina, Breyton, Cécile, Chiarini, Valerio, Chinnam, Naga babu, Chiu, Wah, Fidelis, Krzysztof, Grinter, Rhys, Gupta, Gagan D., Hartmann, Marcus D., Hayes, Christopher S., Heidebrecht, Tatjana, Ilari, Andrea, Joachimiak, Andrzej, Kim, Youngchang, Linares, Romain, Lovering, Andrew L., Lunin, Vladimir V., Lupas, Andrei N., Makbul, Cihan, Michalska, Karolina, Moult, John, Mukherjee, Prasun K., Nutt, William (Sam), Oliver, Stefan L., Perrakis, Anastassis, Stols, Lucy, Tainer, John A., Topf, Maya, Tsutakawa, Susan E., Valdivia‐Delgado, Mauricio, Schwede, Torsten“…The biological and functional significance of selected Critical Assessment of Techniques for Protein Structure Prediction 14 (CASP14) targets are described by the authors of the structures. …”
Publicado 2021
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29por Lázcoz, Paula, Muñoz, Jorge, Nistal, Manuel, Pestaña, Ángel, Encío, Ignacio, Castresana, Javier S“…Methylation was different for tumors and cell lines (tumors: 83% in RASSF1A, 3% in NORE1A, 8% in BLU and 60% in CASP8; cell lines: 100% in RASSF1A, 50% in NORE1A, 66% in BLU and 92% in CASP8). …”
Publicado 2006
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30por Rabe, S, Heymann, MC, Russ, S, Winkler, S, Roesler, J, Rösen-Wolff, A, Hofmann, SREnlace del recurso
Publicado 2013
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31por Tiwari, Meenakshi, Sharma, Lokendra K, Vanegas, Difernando, Callaway, Danielle A, Bai, Yidong, Lechleiter, James D, Herman, Brian“…CASP2/caspase 2 plays a role in aging, neurodegeneration, and cancer. …”
Publicado 2014
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32por Shi, Ting-Yan, He, Jing, Wang, Meng-Yun, Zhu, Mei-Ling, Yu, Ke-Da, Shao, Zhi-Ming, Sun, Meng-Hong, Wu, Xiaohua, Cheng, Xi, Wei, Qingyi“…Polymorphisms in Caspase-7 (CASP7) may modulate the programmed cell death and thus contribute to cervical cancer risk. …”
Publicado 2015
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33por Kryshtafovych, Andriy, Moult, John, Baslé, Arnaud, Burgin, Alex, Craig, Timothy K., Edwards, Robert A., Fass, Deborah, Hartmann, Marcus D., Korycinski, Mateusz, Lewis, Richard J., Lorimer, Donald, Lupas, Andrei N., Newman, Janet, Peat, Thomas S., Piepenbrink, Kurt H., Prahlad, Janani, van Raaij, Mark J., Rohwer, Forest, Segall, Anca M., Seguritan, Victor, Sundberg, Eric J., Singh, Abhimanyu K., Wilson, Mark A., Schwede, Torsten“…The Critical Assessment of protein Structure Prediction (CASP) experiment would not have been possible without the prediction targets provided by the experimental structural biology community. …”
Publicado 2015
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34“…The Critical Assessment of techniques for protein Structure Prediction (or CASP) is a community-wide blind test experiment to reveal the best accomplishments of structure modeling. …”
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35por Xiao, Hong, Peng, Baogan, Ma, Ke, Huang, Dong, Liu, Xianguo, Lu, Yan, Liu, Qing, Lu, Lijuan, Liu, Jingfeng, Li, Yimei, Song, Tao, Tao, Wei, Shen, Wen, Yang, Xiaoqiu, Wang, Lin, Zhang, Xiaomei, Zhuang, Zhigang, Liu, Hui, Liu, YanqingEnlace del recurso
Publicado 2019
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36“…Based on different configurations and training strategies of the deep learning method, five MULTICOM distance predictors were created to participate in the CASP14 experiment. RESULTS: Benchmarked on 37 hard CASP14 domains, the best performing MULTICOM predictor is ranked 5th out of 30 automated CASP14 distance prediction servers in terms of precision of top L/5 long-range contact predictions [i.e. classifying distances between two residues into two categories: in contact (<8 Angstrom) and not in contact otherwise] and performs better than the best CASP13 distance prediction method. …”
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37por Kryshtafovych, Andriy, Moult, John, Billings, Wendy M., Della Corte, Dennis, Fidelis, Krzysztof, Kwon, Sohee, Olechnovič, Kliment, Seok, Chaok, Venclovas, Česlovas, Won, Jonghun“…Critical Assessment of Structure Prediction (CASP) is an organization aimed at advancing the state of the art in computing protein structure from sequence. …”
Publicado 2021
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38por Baek, Minkyung, Anishchenko, Ivan, Park, Hahnbeom, Humphreys, Ian R., Baker, David“…For CASP14, we developed deep learning‐based methods for predicting homo‐oligomeric and hetero‐oligomeric contacts and used them for oligomer modeling. …”
Publicado 2021
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39“…The goal of CASP experiments is to monitor the progress in the protein structure prediction field. …”
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