A genomic catalog of Earth’s microbiomes

por Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.
Publicado 2020

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

por Martin, Kara, Schmidt, Katrin, Toseland, Andrew, Boulton, Chris A., Barry, Kerrie, Beszteri, Bánk, Brussaard, Corina P. D., Clum, Alicia, Daum, Chris G., Eloe-Fadrosh, Emiley, Fong, Allison, Foster, Brian, Foster, Bryce, Ginzburg, Michael, Huntemann, Marcel, Ivanova, Natalia N., Kyrpides, Nikos C., Lindquist, Erika, Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K., Rizkallah, Mariam R., Roux, Simon, Timmermans, Klaas, Tringe, Susannah G., van de Poll, Willem H., Varghese, Neha, Valentin, Klaus U., Lenton, Timothy M., Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas
Publicado 2021

A standardized quantitative analysis strategy for stable isotope probing metagenomics

por Vyshenska, Dariia, Sampara, Pranav, Singh, Kanwar, Tomatsu, Andy, Kauffman, W. Berkeley, Nuccio, Erin E., Blazewicz, Steven J., Pett-Ridge, Jennifer, Louie, Katherine B., Varghese, Neha, Kellom, Matthew, Clum, Alicia, Riley, Robert, Roux, Simon, Eloe-Fadrosh, Emiley A., Ziels, Ryan M., Malmstrom, Rex R.
Publicado 2023

Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota

por Chen, Lin-Xing, Méndez-García, Celia, Dombrowski, Nina, Servín-Garcidueñas, Luis E., Eloe-Fadrosh, Emiley A., Fang, Bao-Zhu, Luo, Zhen-Hao, Tan, Sha, Zhi, Xiao-Yang, Hua, Zheng-Shuang, Martinez-Romero, Esperanza, Woyke, Tanja, Huang, Li-Nan, Sánchez, Jesús, Peláez, Ana Isabel, Ferrer, Manuel, Baker, Brett J., Shu, Wen-Sheng
Publicado 2017

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

por Vigneron, Adrien, Alsop, Eric B., Cruaud, Perrine, Philibert, Gwenaelle, King, Benjamin, Baksmaty, Leslie, Lavallee, David, Lomans, Bartholomeus P., Eloe-Fadrosh, Emiley, Kyrpides, Nikos C., Head, Ian M., Tsesmetzis, Nicolas
Publicado 2019

Optimizing de novo genome assembly from PCR-amplified metagenomes

por Roux, Simon, Trubl, Gareth, Goudeau, Danielle, Nath, Nandita, Couradeau, Estelle, Ahlgren, Nathan A., Zhan, Yuanchao, Marsan, David, Chen, Feng, Fuhrman, Jed A., Northen, Trent R., Sullivan, Matthew B., Rich, Virginia I., Malmstrom, Rex R., Eloe-Fadrosh, Emiley A.
Publicado 2019

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes

por Roux, Simon, Krupovic, Mart, Daly, Rebecca A., Borges, Adair L., Nayfach, Stephen, Schulz, Frederik, Sharrar, Allison, Matheus Carnevali, Paula B., Cheng, Jan-Fang, Ivanova, Natalia N., Bondy-Denomy, Joseph, Wrighton, Kelly C., Woyke, Tanja, Visel, Axel, Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.
Publicado 2019

Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions

por Berg, Maureen, Goudeau, Danielle, Olmsted, Charles, McMahon, Katherine D., Yitbarek, Senay, Thweatt, Jennifer L., Bryant, Donald A., Eloe-Fadrosh, Emiley A., Malmstrom, Rex R., Roux, Simon
Publicado 2021

Positional transfer accuracy of titanium base implant abutment provided by two different scan body designs: an invitro study

por Ramadan, Rania E., Razek, Mahmoud Khamis Abdel, Mohamed, Faten S., Fahmy, Rania A., Abd-Ellah, Mervat E.
Publicado 2023

Terabase-Scale Coassembly of a Tropical Soil Microbiome

por Riley, Robert, Bowers, Robert M., Camargo, Antonio Pedro, Campbell, Ashley, Egan, Rob, Eloe-Fadrosh, Emiley A., Foster, Brian, Hofmeyr, Steven, Huntemann, Marcel, Kellom, Matthew, Kimbrel, Jeffrey A., Oliker, Leonid, Yelick, Katherine, Pett-Ridge, Jennifer, Salamov, Asaf, Varghese, Neha J., Clum, Alicia
Publicado 2023

Effect of the macroalgae Asparagopsis taxiformis on methane production and rumen microbiome assemblage

por Roque, Breanna Michell, Brooke, Charles Garrett, Ladau, Joshua, Polley, Tamsen, Marsh, Lyndsey Jean, Najafi, Negeen, Pandey, Pramod, Singh, Latika, Kinley, Robert, Salwen, Joan King, Eloe-Fadrosh, Emiley, Kebreab, Ermias, Hess, Matthias
Publicado 2019

Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades

por Abraham, Briana S., Caglayan, Deniz, Carrillo, Natalie V., Chapman, Matthew C., Hagan, Claire T., Hansen, Skye T., Jeanty, Ralph O., Klimczak, Alexander A., Klingler, Marcos J., Kutcher, Thomas P., Levy, Sydney H., Millard-Bruzos, Angel A., Moore, Thomas B., Prentice, David J., Prescott, Matthew E., Roehm, Richard, Rose, Jordan A., Yin, Mulan, Hyodo, Ayumi, Lail, Kathleen, Daum, Christopher, Clum, Alicia, Copeland, Alex, Seshadri, Rekha, del Rio, Tijana Glavina, Eloe-Fadrosh, Emiley A., Benskin, Jonathan B.
Publicado 2020

DOE JGI Metagenome Workflow

por Clum, Alicia, Huntemann, Marcel, Bushnell, Brian, Foster, Brian, Foster, Bryce, Roux, Simon, Hajek, Patrick P., Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Yoshinaga, Yuko, O’Malley, Ronan, Seshadri, Rekha, Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A., Chen, I-Min A., Copeland, Alex, Ivanova, Natalia N.
Publicado 2021

Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

por Bowers, Robert M., Nayfach, Stephen, Schulz, Frederik, Jungbluth, Sean P., Ruhl, Ilona A., Sheremet, Andriy, Lee, Janey, Goudeau, Danielle, Eloe-Fadrosh, Emiley A., Stepanauskas, Ramunas, Malmstrom, Rex R., Kyrpides, Nikos C., Dunfield, Peter F., Woyke, Tanja
Publicado 2021

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans

por Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas
Publicado 2022

Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem

por Coclet, Clement, Sorensen, Patrick O., Karaoz, Ulas, Wang, Shi, Brodie, Eoin L., Eloe-Fadrosh, Emiley A., Roux, Simon
Publicado 2023

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

por Trubl, Gareth, Roux, Simon, Solonenko, Natalie, Li, Yueh-Fen, Bolduc, Benjamin, Rodríguez-Ramos, Josué, Eloe-Fadrosh, Emiley A., Rich, Virginia I., Sullivan, Matthew B.
Publicado 2019

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

por Panwar, Pratibha, Allen, Michelle A., Williams, Timothy J., Hancock, Alyce M., Brazendale, Sarah, Bevington, James, Roux, Simon, Páez-Espino, David, Nayfach, Stephen, Berg, Maureen, Schulz, Frederik, Chen, I-Min A., Huntemann, Marcel, Shapiro, Nicole, Kyrpides, Nikos C., Woyke, Tanja, Eloe-Fadrosh, Emiley A., Cavicchioli, Ricardo
Publicado 2020

Organizational knowledge management: archival processing for reuse of administrative information

por Santos, Henrique Machado dos, Krawszuk, Gabriela Luisa
Publicado 2020