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  1. 361
    “…It is publicly available at http://sourceforge.net/projects/pilelinetools under the GNU LGPL license. Full documentation including common use cases and guided analysis workflows is available at http://sing.ei.uvigo.es/pileline.…”
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    PileLine: a toolbox to handle genome position information in next-generation sequencing studies
  2. 362
    “…This conclusion is also supported by dedicated experiments that can exclusively be predicted by those models including an integrator feedback. modelMaGe is an open source project and is distributed under the Gnu General Public License (GPL) and is available from http://modelmage.org.…”
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    Automated Ensemble Modeling with modelMaGe: Analyzing Feedback Mechanisms in the Sho1 Branch of the HOG Pathway
  3. 363
    “…Availability and Implementation: The Objective Caml source code and executables for GNU/Linux and Mac OS X are freely available at http://compbio.mit.edu/PhyloCSF Contact: mlin@mit.edu; manoli@mit.edu…”
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    PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
  4. 364
    “…This program is a free software and is distributed under the terms of the GNU General Public License as published by the Free Software Foundation. …”
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    Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool
  5. 365
    “…Both the pymolecule toolbox and AutoClickChem are released under the GNU General Public License version 3 and are available for download from http://autoclickchem.ucsd.edu.…”
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    AutoClickChem: Click Chemistry in Silico
  6. 366
    “…ANSI C source code and selected compiled binaries for various computing platforms are freely available under the GNU open source license from http://www.theseus3d.org. …”
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    Optimal simultaneous superpositioning of multiple structures with missing data
  7. 367
    “…Availability and implementation: BNFinder2 is implemented in python and freely available under the GNU general public license at the project Web site https://launchpad.net/bnfinder, together with a user’s manual, introductory tutorial and supplementary methods. …”
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    BNFinder2: Faster Bayesian network learning and Bayesian classification
  8. 368
    “…Availability: PiHelper is a free software under the GNU Lesser General Public License (LGPL) v3.0. Source code and documentation are at http://bit.ly/pihelper. …”
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    PiHelper: an open source framework for drug-target and antibody-target data
  9. 369
    “…Therefore, the PD5 software library is published under the terms of the GNU General Public License, which guarantee access to source-code and allow redistribution and modification. …”
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    PD5: A General Purpose Library for Primer Design Software
  10. 370
    “…Availability and implementation: All assembly tools except CLC Genomics Workbench are freely available under GNU General Public License. Contact: brownsd@ornl.gov Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences
  11. 371
    “…Availability and implementation: WGBS code and documentation are available under GNU licence at http://www.wgbssuite.org.uk/ Contact: owen.rackham@imperial.ac.uk or l.bottolo@imperial.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools
  12. 372
    “…The Power Decoder simulator is written in R and Python and is available for download under the GNU General Public License v3.0.…”
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    The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance
  13. 373
    “…CONCLUSIONS: We have made the software implementation of Fizzy available to the public under the GNU GPL license. The standalone implementation can be found at http://github.com/EESI/Fizzy.…”
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    Fizzy: feature subset selection for metagenomics
  14. 374
    “…It is provided under the GNU Public Licence and is available from the authors’ web site or from GitHub. …”
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    BiopLib and BiopTools—a C programming library and toolset for manipulating protein structure
  15. 375
    “…Availability: Pepper is available from the Cytoscape plug-in manager or online (http://apps.cytoscape.org/apps/pepper) and released under GNU General Public License version 3. Contact: mohamed.elati@issb.genopole.fr Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks
  16. 376
    “…The pipeline is under the GNU GPL License and can be downloaded for free at http://fampipe.sourceforge.net.…”
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    FamPipe: An Automatic Analysis Pipeline for Analyzing Sequencing Data in Families for Disease Studies
  17. 377
    “…All of the software is available on GitHub under the GNU GPL open source license.…”
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    Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
  18. 378
    “…The method is available as a stand-alone software package (GNU General Public Licence) from http://github.com/BioToolsLeeds/FlexiCoClusteringPackage.git.…”
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    Flexible model-based clustering of mixed binary and continuous data: application to genetic regulation and cancer
  19. 379
    por Watts, Nicholas A, Feltus, Frank A
    Publicado 2017
    “…AVAILABILITY AND IMPLEMENTATION: BDSS is available under version 2 of the GNU General Public License at https://github.com/feltus/BDSS.…”
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    Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users
  20. 380
    por Yavorska, Olena O, Burgess, Stephen
    Publicado 2017
    “…Both R and the MendelianRandomization package are released under GNU General Public Licenses (GPL-2|GPL-3).…”
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    MendelianRandomization: an R package for performing Mendelian randomization analyses using summarized data
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