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  1. 681
    “…The classifier is available as a free software package under the GNU public licence within the R statistical software environment through the link http://www.bioinformatics.leeds.ac.uk/labpages/softwares/ or on github https://github.com/Sharlene/BDC. …”
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    Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas
  2. 682
    “…VSEARCH is available at https://github.com/torognes/vsearch under either the BSD 2-clause license or the GNU General Public License version 3.0. DISCUSSION: VSEARCH has been shown to be a fast, accurate and full-fledged alternative to USEARCH. …”
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    VSEARCH: a versatile open source tool for metagenomics
  3. 683
    “…TheSNPpit is available under the Open Source GNU General Public License (GPL) Version 2.…”
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    TheSNPpit—A High Performance Database System for Managing Large Scale SNP Data
  4. 684
    “…The RvLab is running on a PC cluster, using version 3.1.2 (2014-10-31) on a x86_64-pc-linux-gnu (64-bit) platform, and offers an intuitive virtual environmet interface enabling users to perform analysis of ecological and microbial communities based on optimized vegan functions. …”
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    Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
  5. 685
    “…It is freely available under the GNU GPL v3 licence and can be accessed from, https://muccg.github.io/mastr-ms/. …”
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    MASTR-MS: a web-based collaborative laboratory information management system (LIMS) for metabolomics
  6. 686
    “…CMOST is freely available under the GNU General Public License at https://gitlab.com/misselwb/CMOST ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12911-017-0458-9) contains supplementary material, which is available to authorized users.…”
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    CMOST: an open-source framework for the microsimulation of colorectal cancer screening strategies
  7. 687
    “…The source code of LAILAPS-QSM is available under GNU General Public License version 2 in Bitbucket GIT repository: https://bitbucket.org/ipk_bit_team/bioescorte-suggestion…”
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    LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions
  8. 688
    “…The code, a detailed manual and tutorials are freely available for Linux/UNIX servers under the GNU GPLv3 license at https://github.com/vinuesa/get_phylomarkers. …”
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    GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas
  9. 689
    “…These commands can be combined into larger workflows using a separate task execution system such as GNU Make, and workflows can be automatically executed within continuous integration systems. …”
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    ROBOT: A Tool for Automating Ontology Workflows
  10. 690
    “…QuaDMutNetEx is available for download from https://github.com/bokhariy/QuaDMutNetExunder the GNU GPLv3 license.…”
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    QuaDMutNetEx: a method for detecting cancer driver genes with low mutation frequency
  11. 691
    “…The Python code of the pipeline is available under the GNU General Public License version 3 at https://github.com/meronvermaas/FEMfuns. …”
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    FEMfuns: A Volume Conduction Modeling Pipeline that Includes Resistive, Capacitive or Dispersive Tissue and Electrodes
  12. 692
    “…CONCLUSION: Using this database, we created a web application (http://pgl.gnu.ac.kr/hormoneDB/) that lists hormone-related or hormone-affected genes and visualizes the boxplot of the gene expression of selected genes. …”
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    Database: web application for visualization of the cumulated RNAseq data against the salicylic acid (SA) and methyl jasmonate (MeJA) treatment of Arabidopsis thaliana
  13. 693
    “…The TFTenricher is available as a Python 3 toolbox at https://github.com/rasma774/Tftenricher, under a GNU GPL license and with minimal dependencies. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-021-04357-4.…”
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    TFTenricher: a python toolbox for annotation enrichment analysis of transcription factor target genes
  14. 694
    “…TAGOPSIN is available as a JAR file at https://github.com/ebundhoo/TAGOPSIN and is released under the GNU General Public License. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-021-04429-5.…”
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    TAGOPSIN: collating taxa-specific gene and protein functional and structural information
  15. 695
    “…METHODS: Testes were obtained post-mortem from 18 artiodactyls (wild boar, roe deer, dwarf goat, mhor gazelle, European mouflon, African forest buffalo, Malayan tapir, dorcas gazelle, Iberian ibex, gnu, red river hog), 5 primates (colobus monkey, capuchin monkey, mandrill), 8 carnivores (gray wolf, Persian leopard, binturong, European mink, American black bear, suricata), and 2 rodents (Patagonian mara). …”
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    DNA integrity and viability of testicular cells from diverse wild species after slow freezing or vitrification
  16. 696
    “…These tools are implemented by using the Python language and licensed under the GNU General Public Licence V3. The source codes and distributions are freely available at GitHub (https://github.com/fountao/protwiz/tree/main/seqwiz). …”
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    SeqWiz: a modularized toolkit for next-generation protein sequence database management and analysis
  17. 697
    “…The software is freely available under the GNU general public license v3. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40168-023-01562-6.…”
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    MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities
  18. 698
    “…The software and datasets are available under the GNU GPL on the supplementary material web page.…”
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    Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
  19. 699
    “…Pheno2Geno is freely available on CRAN under “GNU GPL v3”. The Pheno2Geno package as well as the tutorial can also be found at: http://pheno2geno.nl. …”
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    Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains
  20. 700
    “…BpWrapper has been tested on BioPerl Release 1.6, Perl versions 5.10.1 to 5.25.10, and operating systems including Apple macOS, Microsoft Windows, and GNU/Linux. Release code is available from the Comprehensive Perl Archive Network (CPAN) at https://metacpan.org/pod/Bio::BPWrapper. …”
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    BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines
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