Improvements in the sequencing and assembly of plant genomes

por Sharma, Priyanka, Al-Dossary, Othman, Alsubaie, Bader, Al-Mssallem, Ibrahim, Nath, Onkar, Mitter, Neena, Rodrigues Alves Margarido, Gabriel, Topp, Bruce, Murigneux, Valentine, Kharabian Masouleh, Ardashir, Furtado, Agnelo, Henry, Robert J.
Publicado 2021

LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads

por Kim, Hui-Su, Blazyte, Asta, Jeon, Sungwon, Yoon, Changhan, Kim, Yeonkyung, Kim, Changjae, Bolser, Dan, Ahn, Ji-Hye, Edwards, Jeremy S., Bhak, Jong
Publicado 2022

Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial

por Peel, Emma, Silver, Luke, Brandies, Parice, Hayakawa, Takashi, Belov, Katherine, Hogg, Carolyn J.
Publicado 2022

A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource

por Machado, André M., Gomes-dos-Santos, André, Fonseca, Miguel M., da Fonseca, Rute R., Veríssimo, Ana, Felício, Mónica, Capela, Ricardo, Alves, Nélson, Santos, Miguel, Salvador-Caramelo, Filipe, Domingues, Marcos, Ruivo, Raquel, Froufe, Elsa, Castro, L. Filipe C.
Publicado 2022

Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species

por Bickhart, Derek M., Koch, Lisa M., Smith, Timothy P. L., Riday, Heathcliffe, Sullivan, Michael L.
Publicado 2022

Chromosome-level assembly of the common vetch (Vicia sativa) reference genome

por Xi, Hangwei, Nguyen, Vy, Ward, Christopher, Liu, Zhipeng, Searle, Iain R.
Publicado 2022

De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome

por Lamb, Sydney, Taylor, Adam M., Hughes, Tabitha A., McMillan, Brock R., Larsen, Randy T., Khan, Ruqayya, Weisz, David, Dudchenko, Olga, Aiden, Erez Lieberman, Edelman, Nathaniel B., Frandsen, Paul B.
Publicado 2021

Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan

por Komatsu, Tetsuya, Ohya, Kenji, Ota, Atsushi, Nishiuchi, Yukiko, Yano, Hirokazu, Matsuo, Kayoko, Odoi, Justice Opare, Suganuma, Shota, Sawai, Kotaro, Hasebe, Akemi, Asai, Tetsuo, Yanai, Tokuma, Fukushi, Hideto, Wada, Takayuki, Yoshida, Shiomi, Ito, Toshihiro, Arikawa, Kentaro, Kawai, Mikihiko, Ato, Manabu, Baughn, Anthony D, Iwamoto, Tomotada, Maruyama, Fumito
Publicado 2021

A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species

por Voelker, Julia, Shepherd, Mervyn, Mauleon, Ramil
Publicado 2021

Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae)

por Reynolds, Max, de Oliveira, Lucas, Vosburg, Chad, Paris, Thomson, Massimino, Crissy, Norus, Jordan, Ortiz, Yasmin, Espino, Michelle, Davis, Nina, Masse, Ron, Neiman, Alan, Holcomb, Rachel, Gervais, Kylie, Kemp, Melissa, Hoang, Maria, Shippy, Teresa D., Hosmani, Prashant S., Flores-Gonzalez, Mirella, Pelz-Stelinski, Kirsten, Qureshi, Jawwad A., Mueller, Lukas A., Hunter, Wayne B., Benoit, Joshua B., Brown, Susan J., D’Elia, Tom, Saha, Surya
Publicado 2022

Sex-based de novo transcriptome assemblies of the parasitoid wasp Encarsia suzannae, a host of the manipulative heritable symbiont Cardinium hertigii

por Schultz, Dylan L., Selberherr, Evelyne, Stouthamer, Corinne M., Doremus, Matthew R., Kelly, Suzanne E., Hunter, Martha S., Schmitz-Esser, Stephan
Publicado 2022

Occurrence records and metadata for sand flies (Diptera, Psychodidae, Phlebotominae) collected in the lands of indigenous people in the Brazilian Amazon

por Shimabukuro, Paloma Helena Fernandes, Alves, Daniel Rocha Cangussu, Barros, Jéssica Adalia Costa, Nascimento, Luiz Otavio Cordeiro, Baton, Luke Anthony, Freire, Maíra Posteraro, da Silva, Manoel Edson Medeiros, de Assis, Mauro Diego Gobira Guimarães, Morais, Sofia Ferreira, da Costa, Tiago Silva, Alves, Veracilda Ribeiro, Moreno, Eduardo Stramandinoli
Publicado 2022

Mosquito alert: leveraging citizen science to create a GBIF mosquito occurrence dataset

por Južnič-Zonta, Živko, Sanpera-Calbet, Isis, Eritja, Roger, Palmer, John R.B., Escobar, Agustí, Garriga, Joan, Oltra, Aitana, Richter-Boix, Alex, Schaffner, Francis, della Torre, Alessandra, Miranda, Miguel Ángel, Koopmans, Marion, Barzon, Luisa, Bartumeus Ferre, Frederic
Publicado 2022

Annotation of glycolysis, gluconeogenesis, and trehaloneogenesis pathways provide insight into carbohydrate metabolism in the Asian citrus psyllid

por Tamayo, Blessy, Kercher, Kyle, Vosburg, Chad, Massimino, Crissy, Jernigan, Margaryta R., Hasan, Denisse L., Harper, Douglas, Mathew, Anuja, Adkins, Samuel, Shippy, Teresa, Hosmani, Prashant S., Flores-Gonzalez, Mirella, Panitz, Naftali, Mueller, Lukas A., Hunter, Wayne B., Benoit, Joshua B., Brown, Susan J., D’Elia, Tom, Saha, Surya
Publicado 2022

A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research

por Canales, Nataly Allasi, Pérez-Escobar, Oscar A., Powell, Robyn F., Töpel, Mats, Kidner, Catherine, Nesbitt, Mark, Maldonado, Carla, Barnes, Christopher J., Rønsted, Nina, Przelomska, Natalia A. S., Leitch, Ilia J., Antonelli, Alexandre
Publicado 2022

The genome of Tripterygium wilfordii and characterization of the celastrol biosynthesis pathway

por Pei, Tianlin, Yan, Mengxiao, Kong, Yu, Fan, Hang, Liu, Jie, Cui, Mengying, Fang, Yumin, Ge, Binjie, Yang, Jun, Zhao, Qing
Publicado 2021

aws-s3-integrity-check: an open-source bash tool to verify the integrity of a dataset stored on Amazon S3

por García-Ruiz, Sonia, Reynolds, Regina Hertfelder, Grant-Peters, Melissa, Gustavsson, Emil Karl, Fairbrother-Browne, Aine, Chen, Zhongbo, Brenton, Jonathan William, Ryten, Mina
Publicado 2023

Annotation of segmentation pathway genes in the Asian citrus psyllid, Diaphorina citri

por Miller, Sherry, Shippy, Teresa D., Hosmani, Prashant S., Flores-Gonzalez, Mirella, Mueller, Lukas A., Hunter, Wayne B., Brown, Susan J., D’Elia, Tom, Saha, Surya
Publicado 2021

The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China

por Mu, Weixue, Wei, Jinpu, Yang, Ting, Fan, Yannan, Cheng, Le, Yang, Jinlong, Mu, Ranchang, Liu, Jie, Zhao, Jianming, Sun, Weibang, Xu, Xun, Liu, Xin, Drmanac, Radoje, Liu, Huan
Publicado 2020

Genome assembly and annotation of the tambaqui (Colossoma macropomum): an emblematic fish of the Amazon River Basin

por Hilsdorf, Alexandre Wagner Silva, Uliano-Silva, Marcela, Coutinho, Luiz Lehmann, Montenegro, Horácio, Almeida-Val, Vera Maria Fonseca, Pinhal, Danillo
Publicado 2021