“…AVAILABILITY AND IMPLEMENTATION: The R package joinet is available on GitHub (https://github.com/rauschenberger/joinet) and cran (https://cran.r-project.org/package=joinet). …”
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“…The repositories include test data, and the tools are continuously tested using GitHub Actions and can be installed with the conda dependency manager.…”
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“…AVAILABILITY AND IMPLEMENTATION: EpiCompare is available on Bioconductor (≥ v3.15): https://bioconductor.org/packages/release/bioc/html/EpiCompare.html; all source code is publicly available via GitHub: https://github.com/neurogenomics/EpiCompare; documentation website https://neurogenomics.github.io/EpiCompare; and EpiCompare DockerHub repository: https://hub.docker.com/repository/docker/neurogenomicslab/epicompare.…”
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“…The main objective of this paper is to describe the PCE Simulation Toolkit we have developed and published as an open-source repository on GitHub. We hope that this effort will help make future PCE simulation results reproducible and advance research in the understanding of possible behaviors in this experimental paradigm. …”
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“…We present smalldisco, a command-line tool for small interfering RNA discovery and annotation from small RNA-seq datasets. smalldisco can distinguish short reads that map antisense to an annotated genomic feature (e.g. exons or mRNAs), annotate these siRNAs, and quantify their abundance. smalldisco also uses the program Tailor to quantify 3′ nontemplated nucleotides of siRNAs or any small RNA species. smalldisco and supporting documentation are available for download from GitHub (https://github.com/ianvcaldas/smalldisco) and archived in Zenodo (https://doi.org/10.5281/zenodo.7799621).…”
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“…It could be noted that the deposition of 3–4 layers of coating had similar activity after pasteurization/GIT digestion. And droplets with 3 layers of coating were the minimum and most available formulation for encapsulated probiotics (L. plantarum). …”
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“…The package is currently available from CRAN (https://cran.r-project.org/web/packages/rang/index.html) and GitHub (https://github.com/chainsawriot/rang).…”
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“…A structured search on GitHub and Google Scholar was conducted, leading to the selection of four implementations for detailed analysis. …”
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“…The development version is maintained on GitHub (https://github.com/okdll/mpwR) and full documentation with examples and workflow templates is provided via the package website (https://okdll.github.io/mpwR/).…”
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“…The code for it has been uploaded on GitHub (an online repository of codes) in private mode.…”
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“…The Scikick software is available on GitHub (https://github.com/matthewcarlucci/scikick) and is distributed with PyPi (https://pypi.org/project/scikick/) under a GPL-3 license.…”
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“…The source code and extensive documentation is hosted on GitHub and is also available on the Python Package Index for easy installation.…”
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“…Code source files, MS Windows executable, user manual as well as a sample of working directories populated with assorted files can be freely downloaded from the kSEMAW GitHub repository.…”
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“…The open-source project, code examples and documentation about accessing and using the library are available via GitHub at https://github.com/SynBioDex/libSBOLj3.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code is available on GitHub at https://github.com/John-P/wsic/ under a permissive licence. …”
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“…The Trackplot package is an open-source software which is freely available on Bioconda (https://anaconda.org/bioconda/trackplot), Docker (https://hub.docker.com/r/ygidtu/trackplot), PyPI (https://pypi.org/project/trackplot/) and GitHub (https://github.com/ygidtu/trackplot), and a built-in web server for local deployment is also provided.…”
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“…Currently, MakeSBML is hosted on a GitHub page where the client-based design makes it trivial to move to other hosts. …”
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“…Extrapulmonary small-cell carcinoma (SCC) is a rare neoplasm that shares certain features with its pulmonary counterpart and occurs predominantly in the gastrointestinal tract (GIT). It is a high-grade and poorly differentiated neuroendocrine tumor, usually diagnosed in advanced stages, with a poor prognosis and few therapeutic options in that setting. …”
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“…The TWN-FS method package is available on GitHub at https://github.com/pkj0421/TWN-FS.…”
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“…Aliro is available as open-source from GitHub at: https://github.com/EpistasisLab/Aliro.…”
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