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  1. 441
    “…ProteDNA is available at the following websites: http://protedna.csbb.ntu.edu.tw/ http://protedna.csie.ntu.edu.tw/ http://bio222.esoe.ntu.edu.tw/ProteDNA/.…”
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    ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors
  2. 442
    “…As more and more structures belonging to previously uncharacterized protein families become available, combining sequence and structure information gives good opportunities to facilitate understanding of protein functions in large-scale genome projects. Available at: http://seemotif.csie.ntu.edu.tw,http://seemotif.ee.ncku.edu.tw or http://seemotif.csbb.ntu.edu.tw.…”
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    seeMotif: exploring and visualizing sequence motifs in 3D structures
  3. 443
    “…Access to SIMAP is freely provided through the web portal for individuals (http://mips.gsf.de/simap/) and for programmatic access through DAS (http://webclu.bio.wzw.tum.de/das/) and Web-Service (http://mips.gsf.de/webservices/services/SimapService2.0?…”
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    SIMAP—a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
  4. 444
    “…AmoebaDB (http://AmoebaDB.org) and MicrosporidiaDB (http://MicrosporidiaDB.org) are new functional genomic databases serving the amoebozoa and microsporidia research communities, respectively. …”
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    AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species
  5. 445
    “…Brief machine-readable descriptions of the databases featured in this issue, according to the BioDBcore standards, will be provided at the http://biosharing.org/biodbcore web site. The full content of the Database Issue is freely available online on the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).…”
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    Online Artículo Texto
    The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
  6. 446
    “…Pfam is available via servers in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/). …”
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    Online Artículo Texto
    The Pfam protein families database
  7. 447
    “…As a result, we made recommendations to improve the coverage of curated links, as well as the consistency of information available from different databases while maintaining high-quality curation. Database URLs: http://www.ncbi.nlm.nih.gov/PubMed, http://www.ncbi.nlm.nih.gov/geo/, http://www.rcsb.org/pdb/…”
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    Online Artículo Texto
    Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE
  8. 448
    “…We report the development of OikoBase (http://oikoarrays.biology.uiowa.edu/Oiko/), a tiling array-based genome browser resource for Oikopleura dioica, a metazoan belonging to the urochordates, the closest extant group to vertebrates. …”
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    Online Artículo Texto
    OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica
  9. 449
    “…Two new GenColors-based databases for two fungal species (http://fgb.fli-leibniz.de) and for four social amoebas (http://sacgb.fli-leibniz.de) were set up. …”
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    GenColors-based comparative genome databases for small eukaryotic genomes
  10. 450
    “…Database URL: BioDIG website: http://biodig.org BioDIG source code repository: http://github.com/FriedbergLab/BioDIG The MyDIG database: http://mydig.biodig.org/…”
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    Online Artículo Texto
    Biological Database of Images and Genomes: tools for community annotations linking image and genomic information
  11. 451
    “…With the blooming of Web 2.0, Community Question Answering (CQA) services such as Yahoo! Answers (http://answers.yahoo.com), WikiAnswer (http://wiki.answers.com), and Baidu Zhidao (http://zhidao.baidu.com), etc., have emerged as alternatives for knowledge and information acquisition. …”
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    Online Artículo Texto
    A Topic Clustering Approach to Finding Similar Questions from Large Question and Answer Archives
  12. 452
    “…Database URL: Evidence Ontology Web site: http://evidenceontology.org…”
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    Online Artículo Texto
    Standardized description of scientific evidence using the Evidence Ontology (ECO)
  13. 453
    “…For Korean literature, Korea Med (http://www.koreamed.org), the Korean Medical Database (http://kmbase.medric.or.kr), National Discovery for Science Leaders (www.ndsl.kr), Research Information Sharing Service (http://www.riss.kr), and Google Scholar were searched using the terms "Chinese medicine," "Korean medicine," "herbal medicine," and "metallic contamination" in Korean. …”
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    Online Artículo Texto
    Adverse Events Associated with Metal Contamination of Traditional Chinese Medicines in Korea: A Clinical Review
  14. 454
    “…The ontology is available from http://purl.obolibrary.org/obo/poro.owl, or from the project homepage http://porifera-ontology.googlecode.com/. …”
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    The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology
  15. 455
    por Yates, Andrew, Akanni, Wasiu, Amode, M. Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J., Cunningham, Fiona, Aken, Bronwen L., Zerbino, Daniel R., Flicek, Paul
    Publicado 2016
    “…The Ensembl project (http://www.ensembl.org) is a system for genome annotation, analysis, storage and dissemination designed to facilitate the access of genomic annotation from chordates and key model organisms. …”
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    Ensembl 2016
  16. 456
    “…Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. …”
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    Online Artículo Texto
    Gramene 2016: comparative plant genomics and pathway resources
  17. 457
    “…Releases and documentation are available at http://pypi.python.org/pypi/dreamtools. The source code is available at http://github.com/dreamtools/dreamtools.…”
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    DREAMTools: a Python package for scoring collaborative challenges
  18. 458
    “…Linked Data (LD) aims to achieve interconnected data by representing entities using Unified Resource Identifiers (URIs), and sharing information using Resource Description Frameworks (RDFs) and HTTP. Ontologies, which logically represent entities and relations in specific domains, are the basis of LD. …”
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    Online Artículo Texto
    Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
  19. 459
    “…The Macromolecular Structure Database (MSD) group (http://www.ebi.ac.uk/msd/) continues to enhance the quality and consistency of macromolecular structure data in the worldwide Protein Data Bank (wwPDB) and to work towards the integration of various bioinformatics data resources. …”
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    E-MSD: an integrated data resource for bioinformatics
  20. 460
    “…Database URL: http://www.ensembl.org…”
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    Online Artículo Texto
    Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation
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