Community risks for SARS-CoV-2 infection among fully vaccinated US adults by rurality: A retrospective cohort study from the National COVID Cohort Collaborative

por Anzalone, Alfred Jerrod, Sun, Jing, Vinson, Amanda J., Beasley, William H., Hillegass, William B., Murray, Kimberly, Hendricks, Brian M., Haendel, Melissa, Geary, Carol Reynolds, Bailey, Kristina L., Hanson, Corrine K., Miele, Lucio, Horswell, Ronald, McMurry, Julie A., Porterfield, J. Zachary, Vest, Michael T., Bunnell, H. Timothy, Harper, Jeremy R., Price, Bradley S., Santangelo, Susan L., Rosen, Clifford J., McClay, James C., Hodder, Sally L.
Publicado 2023

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

por Stefancsik, Ray, Balhoff, James P., Balk, Meghan A., Ball, Robyn, Bello, Susan M., Caron, Anita R., Chessler, Elissa, de Souza, Vinicius, Gehrke, Sarah, Haendel, Melissa, Harris, Laura W., Harris, Nomi L., Ibrahim, Arwa, Koehler, Sebastian, Matentzoglu, Nicolas, McMurry, Julie A., Mungall, Christopher J., Munoz-Torres, Monica C., Putman, Tim, Robinson, Peter, Smedley, Damian, Sollis, Elliot, Thessen, Anne E, Vasilevsky, Nicole, Walton, David O., Osumi-Sutherland, David
Publicado 2023

The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease

por Carmody, Leigh C, Gargano, Michael A, Toro, Sabrina, Vasilevsky, Nicole A, Adam, Margaret P, Blau, Hannah, Chan, Lauren E, Gomez-Andres, David, Horvath, Rita, Kraus, Megan L, Ladewig, Markus S, Lewis-Smith, David, Lochmüller, Hanns, Matentzoglu, Nicolas A, Munoz-Torres, Monica C, Schuetz, Catharina, Seitz, Berthold, Similuk, Morgan N, Sparks, Teresa N, Strauss, Timmy, Swietlik, Emilia M, Thompson, Rachel, Zhang, Xingmin Aaron, Mungall, Christopher J, Haendel, Melissa A, Robinson, Peter N
Publicado 2023

The Ontology of Biological Attributes (OBA)—computational traits for the life sciences

por Stefancsik, Ray, Balhoff, James P., Balk, Meghan A., Ball, Robyn L., Bello, Susan M., Caron, Anita R., Chesler, Elissa J., de Souza, Vinicius, Gehrke, Sarah, Haendel, Melissa, Harris, Laura W., Harris, Nomi L., Ibrahim, Arwa, Koehler, Sebastian, Matentzoglu, Nicolas, McMurry, Julie A., Mungall, Christopher J., Munoz-Torres, Monica C., Putman, Tim, Robinson, Peter, Smedley, Damian, Sollis, Elliot, Thessen, Anne E., Vasilevsky, Nicole, Walton, David O., Osumi-Sutherland, David
Publicado 2023

The health care and life sciences community profile for dataset descriptions

por Dumontier, Michel, Gray, Alasdair J.G., Marshall, M. Scott, Alexiev, Vladimir, Ansell, Peter, Bader, Gary, Baran, Joachim, Bolleman, Jerven T., Callahan, Alison, Cruz-Toledo, José, Gaudet, Pascale, Gombocz, Erich A., Gonzalez-Beltran, Alejandra N., Groth, Paul, Haendel, Melissa, Ito, Maori, Jupp, Simon, Juty, Nick, Katayama, Toshiaki, Kobayashi, Norio, Krishnaswami, Kalpana, Laibe, Camille, Le Novère, Nicolas, Lin, Simon, Malone, James, Miller, Michael, Mungall, Christopher J., Rietveld, Laurens, Wimalaratne, Sarala M., Yamaguchi, Atsuko
Publicado 2016

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies

por Matentzoglu, Nicolas, Goutte-Gattat, Damien, Tan, Shawn Zheng Kai, Balhoff, James P, Carbon, Seth, Caron, Anita R, Duncan, William D, Flack, Joe E, Haendel, Melissa, Harris, Nomi L, Hogan, William R, Hoyt, Charles Tapley, Jackson, Rebecca C, Kim, HyeongSik, Kir, Huseyin, Larralde, Martin, McMurry, Julie A, Overton, James A, Peters, Bjoern, Pilgrim, Clare, Stefancsik, Ray, Robb, Sofia MC, Toro, Sabrina, Vasilevsky, Nicole A, Walls, Ramona, Mungall, Christopher J, Osumi-Sutherland, David
Publicado 2022

Generalisable long COVID subtypes: Findings from the NIH N3C and RECOVER programmes

por Reese, Justin T., Blau, Hannah, Casiraghi, Elena, Bergquist, Timothy, Loomba, Johanna J., Callahan, Tiffany J., Laraway, Bryan, Antonescu, Corneliu, Coleman, Ben, Gargano, Michael, Wilkins, Kenneth J., Cappelletti, Luca, Fontana, Tommaso, Ammar, Nariman, Antony, Blessy, Murali, T.M., Caufield, J. Harry, Karlebach, Guy, McMurry, Julie A., Williams, Andrew, Moffitt, Richard, Banerjee, Jineta, Solomonides, Anthony E., Davis, Hannah, Kostka, Kristin, Valentini, Giorgio, Sahner, David, Chute, Christopher G., Madlock-Brown, Charisse, Haendel, Melissa A., Robinson, Peter N.
Publicado 2022

Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency

por Bone, William P., Washington, Nicole L., Buske, Orion J., Adams, David R., Davis, Joie, Draper, David, Flynn, Elise D., Girdea, Marta, Godfrey, Rena, Golas, Gretchen, Groden, Catherine, Jacobsen, Julius, Köhler, Sebastian, Lee, Elizabeth M. J., Links, Amanda E., Markello, Thomas C., Mungall, Christopher J., Nehrebecky, Michele, Robinson, Peter N., Sincan, Murat, Soldatos, Ariane G., Tifft, Cynthia J., Toro, Camilo, Trang, Heather, Valkanas, Elise, Vasilevsky, Nicole, Wahl, Colleen, Wolfe, Lynne A., Boerkoel, Cornelius F., Brudno, Michael, Haendel, Melissa A., Gahl, William A., Smedley, Damian
Publicado 2016

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery

por Zhang, Xingmin Aaron, Yates, Amy, Vasilevsky, Nicole, Gourdine, J. P., Callahan, Tiffany J., Carmody, Leigh C., Danis, Daniel, Joachimiak, Marcin P., Ravanmehr, Vida, Pfaff, Emily R., Champion, James, Robasky, Kimberly, Xu, Hao, Fecho, Karamarie, Walton, Nephi A., Zhu, Richard L., Ramsdill, Justin, Mungall, Christopher J., Köhler, Sebastian, Haendel, Melissa A., McDonald, Clement J., Vreeman, Daniel J., Peden, David B., Bennett, Tellen D., Feinstein, James A., Martin, Blake, Stefanski, Adrianne L., Hunter, Lawrence E., Chute, Christopher G., Robinson, Peter N.
Publicado 2019

Proceedings of a Sickle Cell Disease Ontology workshop — Towards the first comprehensive ontology for Sickle Cell Disease

por Mulder, Nicola, Nembaware, Victoria, Adekile, Adekunle, Anie, Kofi A., Inusa, Baba, Brown, Biobele, Campbell, Andrew, Chinenere, Furahini, Chunda-Liyoka, Catherine, Derebail, Vimal K., Geard, Amy, Ghedira, Kais, Hamilton, Carol M., Hanchard, Neil A., Haendel, Melissa, Huggins, Wayne, Ibrahim, Muntaser, Jupp, Simon, Kamga, Karen Kengne, Knight-Madden, Jennifer, Lopez-Sall, Philomène, Mbiyavanga, Mamana, Munube, Deogratias, Nirenberg, Damian, Nnodu, Obiageli, Ofori-Acquah, Solomon Fiifi, Ohene-Frempong, Kwaku, Opap, Kenneth Babu, Panji, Sumir, Park, Miriam, Pule, Gift, Royal, Charmaine, Sangeda, Raphael, Tayo, Bamidele, Treadwell, Marsha, Tshilolo, Léon, Wonkam, Ambroise
Publicado 2016

Ontologizing health systems data at scale: making translational discovery a reality

por Callahan, Tiffany J., Stefanski, Adrianne L., Wyrwa, Jordan M., Zeng, Chenjie, Ostropolets, Anna, Banda, Juan M., Baumgartner, William A., Boyce, Richard D., Casiraghi, Elena, Coleman, Ben D., Collins, Janine H., Deakyne Davies, Sara J., Feinstein, James A., Lin, Asiyah Y., Martin, Blake, Matentzoglu, Nicolas A., Meeker, Daniella, Reese, Justin, Sinclair, Jessica, Taneja, Sanya B., Trinkley, Katy E., Vasilevsky, Nicole A., Williams, Andrew E., Zhang, Xingmin A., Denny, Joshua C., Ryan, Patrick B., Hripcsak, George, Bennett, Tellen D., Haendel, Melissa A., Robinson, Peter N., Hunter, Lawrence E., Kahn, Michael G.
Publicado 2023

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

por Wagner, Alex H., Walsh, Brian, Mayfield, Georgia, Tamborero, David, Sonkin, Dmitriy, Krysiak, Kilannin, Deu-Pons, Jordi, Duren, Ryan P., Gao, Jianjiong, McMurry, Julie, Patterson, Sara, del Vecchio Fitz, Catherine, Pitel, Beth A., Sezerman, Ozman U., Ellrott, Kyle, Warner, Jeremy L., Rieke, Damian T., Aittokallio, Tero, Cerami, Ethan, Ritter, Deborah I., Schriml, Lynn M., Freimuth, Robert R., Haendel, Melissa, Raca, Gordana, Madhavan, Subha, Baudis, Michael, Beckmann, Jacques S., Dienstmann, Rodrigo, Chakravarty, Debyani, Li, Xuan Shirley, Mockus, Susan, Elemento, Olivier, Schultz, Nikolaus, Lopez-Bigas, Nuria, Lawler, Mark, Goecks, Jeremy, Griffith, Malachi, Griffith, Obi L., Margolin, Adam A.
Publicado 2020

Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology

por Dhombres, Ferdinand, Morgan, Patricia, Chaudhari, Bimal P., Filges, Isabel, Sparks, Teresa N., Lapunzina, Pablo, Roscioli, Tony, Agarwal, Umber, Aggarwal, Shagun, Beneteau, Claire, Cacheiro, Pilar, Carmody, Leigh C., Collardeau‐Frachon, Sophie, Dempsey, Esther A., Dufke, Andreas, Duyzend, Michael Henri, el Ghosh, Mirna, Giordano, Jessica L., Glad, Ragnhild, Grinfelde, Ieva, Iliescu, Dominic G., Ladewig, Markus S., Munoz‐Torres, Monica C., Pollazzon, Marzia, Radio, Francesca Clementina, Rodo, Carlota, Silva, Raquel Gouveia, Smedley, Damian, Sundaramurthi, Jagadish Chandrabose, Toro, Sabrina, Valenzuela, Irene, Vasilevsky, Nicole A., Wapner, Ronald J., Zemet, Roni, Haendel, Melissa A, Robinson, Peter N.
Publicado 2022

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

por Arighi, Cecilia N., Carterette, Ben, Cohen, K. Bretonnel, Krallinger, Martin, Wilbur, W. John, Fey, Petra, Dodson, Robert, Cooper, Laurel, Van Slyke, Ceri E., Dahdul, Wasila, Mabee, Paula, Li, Donghui, Harris, Bethany, Gillespie, Marc, Jimenez, Silvia, Roberts, Phoebe, Matthews, Lisa, Becker, Kevin, Drabkin, Harold, Bello, Susan, Licata, Luana, Chatr-aryamontri, Andrew, Schaeffer, Mary L., Park, Julie, Haendel, Melissa, Van Auken, Kimberly, Li, Yuling, Chan, Juancarlos, Muller, Hans-Michael, Cui, Hong, Balhoff, James P., Chi-Yang Wu, Johnny, Lu, Zhiyong, Wei, Chih-Hsuan, Tudor, Catalina O., Raja, Kalpana, Subramani, Suresh, Natarajan, Jeyakumar, Cejuela, Juan Miguel, Dubey, Pratibha, Wu, Cathy
Publicado 2013

The Ontology for Biomedical Investigations

por Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A., He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L., Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A., Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Soldatova, Larisa N., Stoeckert, Christian J., Taylor, Chris F., Torniai, Carlo, Turner, Jessica A., Vita, Randi, Whetzel, Patricia L., Zheng, Jie
Publicado 2016

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

por McMurry, Julie A., Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K., Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C., Jimenez, Rafael C., Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R., Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L., Soiland-Reyes, Stian, Stanford, Natalie J., Swainston, Neil, Washington, Nicole, Williams, Alan R., Wimalaratne, Sarala M., Winfree, Lilly M., Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J., Haendel, Melissa A., Parkinson, Helen
Publicado 2017

A Simple Standard for Sharing Ontological Mappings (SSSOM)

por Matentzoglu, Nicolas, Balhoff, James P, Bello, Susan M, Bizon, Chris, Brush, Matthew, Callahan, Tiffany J, Chute, Christopher G, Duncan, William D, Evelo, Chris T, Gabriel, Davera, Graybeal, John, Gray, Alasdair, Gyori, Benjamin M, Haendel, Melissa, Harmse, Henriette, Harris, Nomi L, Harrow, Ian, Hegde, Harshad B, Hoyt, Amelia L, Hoyt, Charles T, Jiao, Dazhi, Jiménez-Ruiz, Ernesto, Jupp, Simon, Kim, Hyeongsik, Koehler, Sebastian, Liener, Thomas, Long, Qinqin, Malone, James, McLaughlin, James A, McMurry, Julie A, Moxon, Sierra, Munoz-Torres, Monica C, Osumi-Sutherland, David, Overton, James A, Peters, Bjoern, Putman, Tim, Queralt-Rosinach, Núria, Shefchek, Kent, Solbrig, Harold, Thessen, Anne, Tudorache, Tania, Vasilevsky, Nicole, Wagner, Alex H, Mungall, Christopher J
Publicado 2022

Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative

por Pfaff, Emily R, Girvin, Andrew T, Gabriel, Davera L, Kostka, Kristin, Morris, Michele, Palchuk, Matvey B, Lehmann, Harold P, Amor, Benjamin, Bissell, Mark, Bradwell, Katie R, Gold, Sigfried, Hong, Stephanie S, Loomba, Johanna, Manna, Amin, McMurry, Julie A, Niehaus, Emily, Qureshi, Nabeel, Walden, Anita, Zhang, Xiaohan Tanner, Zhu, Richard L, Moffitt, Richard A, Haendel, Melissa A, Chute, Christopher G, Adams, William G, Al-Shukri, Shaymaa, Anzalone, Alfred, Baghal, Ahmad, Bennett, Tellen D, Bernstam, Elmer V, Bernstam, Elmer V, Bissell, Mark M, Bush, Brian, Campion, Thomas R, Castro, Victor, Chang, Jack, Chaudhari, Deepa D, Chen, Wenjin, Chu, San, Cimino, James J, Crandall, Keith A, Crooks, Mark, Davies, Sara J Deakyne, DiPalazzo, John, Dorr, David, Eckrich, Dan, Eltinge, Sarah E, Fort, Daniel G, Golovko, George, Gupta, Snehil, Haendel, Melissa A, Hajagos, Janos G, Hanauer, David A, Harnett, Brett M, Horswell, Ronald, Huang, Nancy, Johnson, Steven G, Kahn, Michael, Khanipov, Kamil, Kieler, Curtis, Luzuriaga, Katherine Ruiz De, Maidlow, Sarah, Martinez, Ashley, Mathew, Jomol, McClay, James C, McMahan, Gabriel, Melancon, Brian, Meystre, Stephane, Miele, Lucio, Morizono, Hiroki, Pablo, Ray, Patel, Lav, Phuong, Jimmy, Popham, Daniel J, Pulgarin, Claudia, Santos, Carlos, Sarkar, Indra Neil, Sazo, Nancy, Setoguchi, Soko, Soby, Selvin, Surampalli, Sirisha, Suver, Christine, Vangala, Uma Maheswara Reddy, Visweswaran, Shyam, von Oehsen, James, Walters, Kellie M, Wiley, Laura, Williams, David A, Zai, Adrian
Publicado 2021

The National COVID Cohort Collaborative: Clinical Characterization and Early Severity Prediction

por Bennett, Tellen D., Moffitt, Richard A., Hajagos, Janos G., Amor, Benjamin, Anand, Adit, Bissell, Mark M., Bradwell, Katie Rebecca, Bremer, Carolyn, Byrd, James Brian, Denham, Alina, DeWitt, Peter E., Gabriel, Davera, Garibaldi, Brian T., Girvin, Andrew T., Guinney, Justin, Hill, Elaine L., Hong, Stephanie S., Jimenez, Hunter, Kavuluru, Ramakanth, Kostka, Kristin, Lehmann, Harold P., Levitt, Eli, Mallipattu, Sandeep K., Manna, Amin, McMurry, Julie A., Morris, Michele, Muschelli, John, Neumann, Andrew J., Palchuk, Matvey B., Pfaff, Emily R., Qian, Zhenglong, Qureshi, Nabeel, Russell, Seth, Spratt, Heidi, Walden, Anita, Williams, Andrew E., Wooldridge, Jacob T., Yoo, Yun Jae, Zhang, Xiaohan Tanner, Zhu, Richard L., Austin, Christopher P., Saltz, Joel H., Gersing, Ken R., Haendel, Melissa A., Chute, Christopher G.
Publicado 2021

Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative

por Bennett, Tellen D., Moffitt, Richard A., Hajagos, Janos G., Amor, Benjamin, Anand, Adit, Bissell, Mark M., Bradwell, Katie Rebecca, Bremer, Carolyn, Byrd, James Brian, Denham, Alina, DeWitt, Peter E., Gabriel, Davera, Garibaldi, Brian T., Girvin, Andrew T., Guinney, Justin, Hill, Elaine L., Hong, Stephanie S., Jimenez, Hunter, Kavuluru, Ramakanth, Kostka, Kristin, Lehmann, Harold P., Levitt, Eli, Mallipattu, Sandeep K., Manna, Amin, McMurry, Julie A., Morris, Michele, Muschelli, John, Neumann, Andrew J., Palchuk, Matvey B., Pfaff, Emily R., Qian, Zhenglong, Qureshi, Nabeel, Russell, Seth, Spratt, Heidi, Walden, Anita, Williams, Andrew E., Wooldridge, Jacob T., Yoo, Yun Jae, Zhang, Xiaohan Tanner, Zhu, Richard L., Austin, Christopher P., Saltz, Joel H., Gersing, Ken R., Haendel, Melissa A., Chute, Christopher G.
Publicado 2021