Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

por Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan
Publicado 2012

Towards an open grapevine information system

por Adam-Blondon, A-F, Alaux, M, Pommier, C, Cantu, D, Cheng, Z-M, Cramer, GR, Davies, C, Delrot, S, Deluc, L, Di Gaspero, G, Grimplet, J, Fennell, A, Londo, JP, Kersey, P, Mattivi, F, Naithani, S, Neveu, P, Nikolski, M, Pezzotti, M, Reisch, BI, Töpfer, R, Vivier, MA, Ware, D, Quesneville, H
Publicado 2016

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms

por Brewer, Grace E., Clarkson, James J., Maurin, Olivier, Zuntini, Alexandre R., Barber, Vanessa, Bellot, Sidonie, Biggs, Nicola, Cowan, Robyn S., Davies, Nina M. J., Dodsworth, Steven, Edwards, Sara L., Eiserhardt, Wolf L., Epitawalage, Niroshini, Frisby, Sue, Grall, Aurélie, Kersey, Paul J., Pokorny, Lisa, Leitch, Ilia J., Forest, Félix, Baker, William J.
Publicado 2019

Isolation and Whole-Genome Sequencing of 12 Mushroom-Associated Bacterial Strains: an Inquiry-Based Laboratory Exercise in a Genomics Course at the Rochester Institute of Technolog...

por Wong, Narayan H., Rosato, Andrew J., Rose, Yara M., Penix, Trevor S., Fung, Janice B., Vanitski, Alexis L., Goossen, Christian J., Bradshaw, Spencer G., Lopp, Spencer M., Pennington, Aaron D., Darmohray, Vincent M., Steiner, KayLee K., Kersey, Gina E., Brylow, Karl B., Pridmore, Mariel V., Hedges, Joseph S., Rynkiewicz, Patrick, Hudson, André O.
Publicado 2020

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

por Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rátsch, Gunnar, Mott, Richard
Publicado 2011

Advancing vector biology research: a community survey for future directions, research applications and infrastructure requirements

por Kohl, Alain, Pondeville, Emilie, Schnettler, Esther, Crisanti, Andrea, Supparo, Clelia, Christophides, George K., Kersey, Paul J., Maslen, Gareth L., Takken, Willem, Koenraadt, Constantianus J. M., Oliva, Clelia F., Busquets, Núria, Abad, F. Xavier, Failloux, Anna-Bella, Levashina, Elena A., Wilson, Anthony J., Veronesi, Eva, Pichard, Maëlle, Arnaud Marsh, Sarah, Simard, Frédéric, Vernick, Kenneth D.
Publicado 2016

Gramene 2013: comparative plant genomics resources

por Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D’Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, Ware, Doreen
Publicado 2014

Measures for interoperability of phenotypic data: minimum information requirements and formatting

por Ćwiek-Kupczyńska, Hanna, Altmann, Thomas, Arend, Daniel, Arnaud, Elizabeth, Chen, Dijun, Cornut, Guillaume, Fiorani, Fabio, Frohmberg, Wojciech, Junker, Astrid, Klukas, Christian, Lange, Matthias, Mazurek, Cezary, Nafissi, Anahita, Neveu, Pascal, van Oeveren, Jan, Pommier, Cyril, Poorter, Hendrik, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Scholz, Uwe, van Schriek, Marco, Seren, Ümit, Usadel, Björn, Weise, Stephan, Kersey, Paul, Krajewski, Paweł
Publicado 2016

Analysis of the bread wheat genome using whole genome shotgun sequencing

por Brenchley, Rachel, Spannagl, Manuel, Pfeifer, Matthias, Barker, Gary L.A., D’Amore, Rosalinda, Allen, Alexandra M., McKenzie, Neil, Kramer, Melissa, Kerhornou, Arnaud, Bolser, Dan, Kay, Suzanne, Waite, Darren, Trick, Martin, Bancroft, Ian, Gu, Yong, Huo, Naxin, Luo, Ming-Cheng, Sehgal, Sunish, Kianian, Sharyar, Gill, Bikram, Anderson, Olin, Kersey, Paul, Dvorak, Jan, McCombie, Richard, Hall, Anthony, Mayer, Klaus F.X., Edwards, Keith J., Bevan, Michael W., Hall, Neil
Publicado 2012

WormBase 2017: molting into a new stage

por Lee, Raymond Y N, Howe, Kevin L, Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Gao, Sibyl, Grove, Christian, Kishore, Ranjana, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye, Russell, Matt, Schindelman, Gary, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W
Publicado 2018

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

por Baker, William J, Bailey, Paul, Barber, Vanessa, Barker, Abigail, Bellot, Sidonie, Bishop, David, Botigué, Laura R, Brewer, Grace, Carruthers, Tom, Clarkson, James J, Cook, Jeffrey, Cowan, Robyn S, Dodsworth, Steven, Epitawalage, Niroshini, Françoso, Elaine, Gallego, Berta, Johnson, Matthew G, Kim, Jan T, Leempoel, Kevin, Maurin, Olivier, Mcginnie, Catherine, Pokorny, Lisa, Roy, Shyamali, Stone, Malcolm, Toledo, Eduardo, Wickett, Norman J, Zuntini, Alexandre R, Eiserhardt, Wolf L, Kersey, Paul J, Leitch, Ilia J, Forest, Félix
Publicado 2021

Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors

por Campbell, Lahcen I., Nwezeobi, Joachim, van Brunschot, Sharon L., Kaweesi, Tadeo, Seal, Susan E., Swamy, Rekha A. R., Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M. N., Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus, Colvin, John
Publicado 2023

WormBase 2014: new views of curated biology

por Harris, Todd W., Baran, Joachim, Bieri, Tamberlyn, Cabunoc, Abigail, Chan, Juancarlos, Chen, Wen J., Davis, Paul, Done, James, Grove, Christian, Howe, Kevin, Kishore, Ranjana, Lee, Raymond, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Ozersky, Philip, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Tuli, Mary Ann, Auken, Kimberly Van, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wong, J. D., Yook, Karen, Schedl, Tim, Hodgkin, Jonathan, Berriman, Matthew, Kersey, Paul, Spieth, John, Stein, Lincoln, Sternberg, Paul W.
Publicado 2014

Gramene 2016: comparative plant genomics and pathway resources

por Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tang, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, Ware, Doreen
Publicado 2016

WormBase 2016: expanding to enable helminth genomic research

por Howe, Kevin L., Bolt, Bruce J., Cain, Scott, Chan, Juancarlos, Chen, Wen J., Davis, Paul, Done, James, Down, Thomas, Gao, Sibyl, Grove, Christian, Harris, Todd W., Kishore, Ranjana, Lee, Raymond, Lomax, Jane, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Stanley, Eleanor, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W.
Publicado 2016

Ensembl Genomes 2013: scaling up access to genome-wide data

por Kersey, Paul Julian, Allen, James E., Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Hughes, Daniel Seth Toney, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Langridge, Nicholas, McDowall, Mark D., Maheswari, Uma, Maslen, Gareth, Nuhn, Michael, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Tuli, Mary Ann, Walts, Brandon, Williams, Gareth, Wilson, Derek, Youens-Clark, Ken, Monaco, Marcela K., Stein, Joshua, Wei, Xuehong, Ware, Doreen, Bolser, Daniel M., Howe, Kevin Lee, Kulesha, Eugene, Lawson, Daniel, Staines, Daniel Michael
Publicado 2014

WormBase 2012: more genomes, more data, new website

por Yook, Karen, Harris, Todd W., Bieri, Tamberlyn, Cabunoc, Abigail, Chan, Juancarlos, Chen, Wen J., Davis, Paul, de la Cruz, Norie, Duong, Adrian, Fang, Ruihua, Ganesan, Uma, Grove, Christian, Howe, Kevin, Kadam, Snehalata, Kishore, Ranjana, Lee, Raymond, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nash, Bill, Ozersky, Philip, Paulini, Michael, Raciti, Daniela, Rangarajan, Arun, Schindelman, Gary, Shi, Xiaoqi, Schwarz, Erich M., Ann Tuli, Mary, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Hodgkin, Jonathan, Berriman, Matthew, Durbin, Richard, Kersey, Paul, Spieth, John, Stein, Lincoln, Sternberg, Paul W.
Publicado 2012

Ensembl Genomes 2016: more genomes, more complexity

por Kersey, Paul Julian, Allen, James E., Armean, Irina, Boddu, Sanjay, Bolt, Bruce J., Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K., Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D., Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello–Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M., Howe, Kevin L., Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M.
Publicado 2016

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

por Clavijo, Bernardo J., Venturini, Luca, Schudoma, Christian, Accinelli, Gonzalo Garcia, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Lu, Fu-Hao, McKenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H., Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Trösch, Josua, Yu, Guotai, Bolser, Dan M., Namaati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P., Fosker, Christine, Palma, Federica Di, Phillips, Andrew L., Millar, A. Harvey, Kersey, Paul J., Uauy, Cristobal, Krasileva, Ksenia V., Swarbreck, David, Bevan, Michael W., Clark, Matthew D.
Publicado 2017

Gramene 2018: unifying comparative genomics and pathway resources for plant research

por Tello-Ruiz, Marcela K, Naithani, Sushma, Stein, Joshua C, Gupta, Parul, Campbell, Michael, Olson, Andrew, Wei, Sharon, Preece, Justin, Geniza, Matthew J, Jiao, Yinping, Lee, Young Koung, Wang, Bo, Mulvaney, Joseph, Chougule, Kapeel, Elser, Justin, Al-Bader, Noor, Kumari, Sunita, Thomason, James, Kumar, Vivek, Bolser, Daniel M, Naamati, Guy, Tapanari, Electra, Fonseca, Nuno, Huerta, Laura, Iqbal, Haider, Keays, Maria, Munoz-Pomer Fuentes, Alfonso, Tang, Amy, Fabregat, Antonio, D’Eustachio, Peter, Weiser, Joel, Stein, Lincoln D, Petryszak, Robert, Papatheodorou, Irene, Kersey, Paul J, Lockhart, Patti, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen
Publicado 2018