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9461por Liu, Fuqiang, Wei, Tao, Liu, Lin, Hou, Fangxia, Xu, Cuixiang, Guo, Hua, Zhang, Wei, Ma, Meijuan, Zhang, Yulian, Yu, Qi, Wang, Junkui“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of NRDEGs were also performed. …”
Publicado 2022
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9462por Han, Qianguang, Zhang, Xiang, Ren, Xiaohan, Hang, Zhou, Yin, Yu, Wang, Zijie, Chen, Hao, Sun, Li, Tao, Jun, Han, Zhijian, Tan, Ruoyun, Gu, Min, Ju, Xiaobing“…Then a predictive model of BPAR was established based on logistic regression of which key transcripts involved in the predictive model were further explored using functional enrichment analyses including Gene Ontology analysis (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and Gene Set Enrichment Analysis (GSEA). …”
Publicado 2022
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9463por Xia, Yiming, Huang, Xiaoling, Mo, Lidong, Wang, Chen, Fan, Weijia, Huang, Huiling“…RESULTS: There were total of 8275 proteins found, but only 35 differentially expressed proteins were identified (27 up-regulated and 8 down-regulated), and gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to predict the biological pathways and functional classification of the proteins. …”
Publicado 2022
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9464por Ai, Hu“…Using this method, genes are filtered according to their importance following random forest training and GSEA is used to select genes by core enrichment of Kyoto Encyclopedia of Genes and Genomes pathways that are strongly related to breast cancer. …”
Publicado 2022
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9465“…Proteomic analysis identified 311 differentially expressed proteins (DEPs) between the two groups, and a Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis suggested that the DEPs were mainly enriched in signaling pathways such as metabolic pathways, protein processing in the endoplasmic reticulum, and complement and coagulation cascades. …”
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9466“…The results of gene ontology (GO) and kyoto encyclopedia of genes and genomes (KEGG) pathway analyses of the KDM5 family and its 800 co-expressed genes showed that many gene terms related to cell proliferation, migration and many carcinogenic pathways. …”
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9467“…Subsequently, Gene Ontology (GO) biological process (BP) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed to explore the principal functions of the significant DEGs. …”
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9468por Wu, Rong, Dou, Xiaojie, Li, Haidong, Sun, Zhenguo, Li, Heng, Shen, Yuxin, Weng, Wei, Min, Jikang“…Single-cell transcriptomic analysis of osteosarcoma tissues was performed by using the Seurat R package, the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of differentially expressed genes was performed by using the clusterProfiler R package, and the cell–cell interaction analysis was performed by using the CellPhoneDB package. …”
Publicado 2022
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9469por Han, Zhaodong, Mo, Rujun, Cai, Shanghua, Feng, Yuanfa, Tang, Zhenfeng, Ye, Jianheng, Liu, Ren, Cai, Zhiduan, Zhu, Xuejin, Deng, Yulin, Zou, Zhihao, Wu, Yongding, Cai, Zhouda, Liang, Yuxiang, Zhong, Weide“…In this study, The Cancer Genome Atlas (TCGA), Kaplan–Meier Plotter, Metascape, the Kyoto Encyclopedia of Genes and Genomes (KEGG), CIBERSORT, and cBioPortal and bioinformatic analysis were used to investigate E2Fs in patients with PCa. …”
Publicado 2022
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9470por Cheng, Yuan, Kou, Fushun, Zhang, Xiaosi, Dai, Yi, Shi, Lei, Xie, Chune, Li, Xiaohong, Li, Junxiang“…Then, gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed. …”
Publicado 2022
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9471por Liu, Xin-Yuan, Zhang, Tian-Qi, Zhang, Qi, Guo, Jing, Zhang, Peng, Mao, Tao, Tian, Zi-Bin, Zhang, Cui-Ping, Li, Xiao-Yu“…We also predicted the target mRNAs of the differentially expressed lncRNAs through bioinformatics analysis and analyzed targeting correlations between three differentially co-expressed lncRNAs and mRNAs (lncRNA H19, LINC00895, and lnc-SRGAP2C-16). Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases were used to explore the functions of target mRNAs of differentially expressed lncRNAs. …”
Publicado 2022
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9472“…R software was used to screen differentially expressed genes (DEGs), Gene Ontology (GO) functional enrichment, and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. …”
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9473por Liu, Wen-Chao, Pan, Zi-Yi, Zhao, Yue, Guo, Yan, Qiu, Sheng-Jian, Balasubramanian, Balamuralikrishnan, Jha, Rajesh“…Cecal metabolomics analysis indicated 19 differential metabolites between the two groups (p < 0.10, VIP >1). The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the differential metabolites mainly enriched in 10 signaling pathways such as the Citrate cycle (TCA cycle) (p < 0.01). …”
Publicado 2022
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9474“…Differentially expressed genes (DEGs) were identified, and the Database for Annotation, Visualization, and Integrated Discovery (DAVID) was used for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. …”
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9475por Wang, Zhijun, Li, Yanjun, Zhu, Qianhao, Tian, Liwen, Liu, Feng, Zhang, Xinyu, Sun, Jie“…Genes differentially expressed between the MC and mock treatments of XLZ74 (6252) and SD1068 (6163) were subjected to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses to compare the enriched GO terms and KEGG pathways between the two varieties. …”
Publicado 2022
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9476por Zhao, Hong, Wu, Yawei, Shen, Luonan, Hou, Qiandong, Wu, Rongju, Li, Zhengchun, Deng, Lin, Wen, Xiaopeng“…Many enzyme−related candidate genes e.g., MmCAT1, MmSOD1 and MmPOD21 were up−regulated to low−Pi treatment. Furthermore, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that the processes of photosynthesis, plant hormone signal transduction, and MAPK signaling pathway were affected in the low−Pi response. …”
Publicado 2022
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9477por Ren, Xilin, Liu, Jinlei, Ndandala, Charles Brighton, Li, Xiaomeng, Guo, Yuwen, Li, Guangli, Chen, Huapu“…In this study, 99 genes were screened and identified as differentially expressed genes, including 77 up-regulated genes and 22 down-regulated genes. According to the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) pathway analyses, these pathways and the typical genes involved can be divided into cellular processes, environmental information processing, genetic information processing, diseases, metabolism and organismal systems. …”
Publicado 2022
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9478por Li, Dan, Zhang, Hao, Wu, Xueqin, Dai, Qing, Tang, Shiqi, Liu, Yan, Yang, Shikun, Zhang, Wei“…Gene Ontology analysis for target genes of the tRFs/tiRNAs showed that the most enriched cell components, molecular functions and biological processes were Golgi apparatus, cytoplasmic vesicles, protein binding, cellular protein localization and multicellular organism development. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that these target genes were mainly involved in the natural killer cell mediated cytotoxicity pathway, citrate cycle, and regulation of actin cytoskeleton signaling pathway. …”
Publicado 2022
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9479por Li, Bin, Li, Suchun, Fan, Yuting, Diao, Hui, Ye, Siyang, Peng, Huajing, Chen, Wei“…First, the differentially expressed genes (DEGs) were identified and subjected to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. …”
Publicado 2022
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9480RNA-Seq analysis of duck embryo fibroblast cells gene expression during duck Tembusu virus infectionpor Pan, Yuhong, Wu, Xuedong, Cai, Wenjun, Cheng, Anchun, Wang, Mingshu, Chen, Shun, Huang, Juan, Yang, Qiao, Wu, Ying, Sun, Di, Mao, Sai, Zhu, Dekang, Liu, Mafeng, Zhao, Xinxin, Zhang, Shaqiu, Gao, Qun, Ou, Xumin, Tian, Bin, Yin, Zhongqiong, Jia, Renyong“…Gene Ontology (GO) category and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed that these DEG were associated with multiple biological functions, including signal transduction, host immunity, virus infection, cell apoptosis, cell proliferation, and pathogenicity-related and metabolic process signaling pathways. …”
Publicado 2022
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