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9961por Xu, Li-Na, Wang, Yue-Qin, Wang, Zhen-Ying, Hu, Ben-Jin, Ling, Ying-Hui, He, Kang-Lai“…There were 35,723 annotated unigenes from ACB reads found by BLAST searching NCBI non-redundant, NCBI non-redundant nucleotide, Swiss-prot protein, Kyoto Encyclopedia of Genes and Genomes, Cluster of Orthologous Groups of proteins, and Gene Ontology databases. …”
Publicado 2015
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9962por He, Haowei, Wang, Linhui, Zhou, Wenquan, Zhang, Zhengyu, Wang, Longxin, Xu, Song, Wang, Dong, Dong, Jie, Tang, Chaopeng, Tang, Hao, Yi, Xiaoming, Ge, Jingping“…The 11 miRNAs and their predicted target genes were analyzed by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, and three key miRNAs (miR-199a-5p, miR-22 and miR-429) were identified by microRNA-gene network analysis. …”
Publicado 2015
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9963por Jeffryes, James G, Colastani, Ricardo L, Elbadawi-Sidhu, Mona, Kind, Tobias, Niehaus, Thomas D, Broadbelt, Linda J, Hanson, Andrew D, Fiehn, Oliver, Tyo, Keith E J, Henry, Christopher S“…We utilize an algorithm called the Biochemical Network Integrated Computational Explorer (BNICE) and expert-curated reaction rules based on the Enzyme Commission classification system to propose the novel chemical structures and reactions that comprise MINE databases. Starting from the Kyoto Encyclopedia of Genes and Genomes (KEGG) COMPOUND database, the MINE contains over 571,000 compounds, of which 93% are not present in the PubChem database. …”
Publicado 2015
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9964por Li, Hong, Wang, Taian, Xu, Chunlin, Wang, Dandan, Ren, Junxiao, Li, Yanmin, Tian, Yadong, Wang, Yanbin, Jiao, Yuping, Kang, Xiangtao, Liu, Xiaojun“…Gene ontology (GO) enrichment and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis showed that the SDE genes were most enrichment in steroid biosynthesis, PPAR signaling pathway, biosynthesis of unsaturated fatty acids, glycerophospholipid metabolism, three amino acid pathways, and pyruvate metabolism (P ≤ 0.05). …”
Publicado 2015
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9965por Wei, Rongchang, Qiu, Deyou, Wilson, Iain W., Zhao, Huan, Lu, Shanfa, Miao, Jianhua, Feng, Shixin, Bai, Longhua, Wu, Qinghua, Tu, Dongping, Ma, Xiaojun, Tang, Qi“…Potential miRNA target genes were predicted and annotated using Cluster of Orthologous Groups, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes. Comparing these miRNAs between root samples revealed 33 that were differentially expressed between 2- and 1-year-old roots (8 increased, 25 decreased), 27 differentially expressed between 3- and 1-year-old roots (7 increased, 20 decreased), and 29 differentially expressed between 3- and 2-year-old roots (8 increased, 21 decreased). …”
Publicado 2015
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9966“…Searching against the Kyoto Encyclopedia of Genes and Genomes Pathway database (KEGG) indicated that 14,216 unigenes were mapped to 268 KEGG pathways. …”
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9967“…The remaining 3 proteins were only involved in MF. In addition, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis identified 18 proteins that were involved in 13 separate metabolic pathways. …”
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9968por Friques, Andreia G. F., Arpini, Clarisse M., Kalil, Ieda C., Gava, Agata L., Leal, Marcos A., Porto, Marcella L., Nogueira, Breno V., Dias, Ananda T., Andrade, Tadeu U., Pereira, Thiago Melo C., Meyrelles, Silvana S., Campagnaro, Bianca P., Vasquez, Elisardo C.“…METHODS: SHR were treated with kefir (0.3 mL/100 g body weight) for 7, 15, 30 and 60 days and compared with non-treated SHR and with normotensive Wistar-Kyoto rats. Vascular endothelial function was evaluated in aortic rings through the relaxation response to acetylcholine (ACh). …”
Publicado 2015
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9969“…A total of 104,180 unigenes were finally generated with an average length of 520 bp. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway mapping assigned 26 unigenes, representing three enzyme families of 4-coumarate:coenzyme A ligase (4CL), chalcone synthase (CHS) and chalcone isomerase(CHI), onto (2S)-pinocembrin biosynthetic pathway. …”
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9970por Ouyang, Yangyang, Guo, Jinsheng, Lin, Chenzhao, Lin, Jie, Cao, Yirong, Zhang, Yuanqin, Wu, Yujin, Chen, Shiyao, Wang, Jiyao, Chen, Luonan, Friedman, Scott L.“…Gene interaction and co-expression networks were built on the basis of ontology and pathway analysis by Kyoto Encyclopedia of Genes and Genomes (KEGG). Gene expression profiles are markedly different between Wild type (JS1) and TLR4 knockout (JS2) HSCs under basal conditions or following stimulation with LPS or HMGB1. …”
Publicado 2016
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9971por Potenza, Maria Assunta, Montagnani, Monica, Nacci, Carmela, De Salvia, Maria Antonietta“…DESIGN: Nine-week-old SHR were randomly assigned to two groups and treated by gavage for 3 weeks with vehicle dimethyl sulfoxide or EGCG (200 mg/kg/day). Age-matched Wistar-Kyoto (WKY) control rats were treated with vehicle alone. …”
Publicado 2016
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9972por Li, Shaofeng, Fan, Chengming, Li, Yan, Zhang, Jianhui, Sun, Jingshuang, Chen, Yuhong, Tian, Changyan, Su, Xiaohua, Lu, Mengzhu, Liang, Chengzhi, Hu, Zanmin“…These annotations included 56 GO terms, 148 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and 25 Clusters of Orthologous Groups (COG). …”
Publicado 2016
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9973por Tsai, Chi-Chu, Wu, Keh-Ming, Chiang, Tzen-Yuh, Huang, Chun-Yen, Chou, Chang-Hung, Li, Shu-Ju, Chiang, Yu-Chung“…After Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, 112 up-regulated unigenes with KEGG Ortholog identifiers (KOids) or enzyme commission (EC) numbers were assigned to 159 isogroups involved in seventy-eight different pathways, and 132 down-regulated unigenes with KOids or EC numbers were assigned to 168 isogroups, involved in eighty different pathways. …”
Publicado 2016
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9974“…Annotation of unigenes using public databases; GenBank, Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), Cluster of Orthologous Groups (COG) and Gene Ontology (GO) produced 25, 880 annotated unigenes. …”
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9975“…In the current study, 10 Wistar-Kyoto (WKY) rats (control group) and 30 spontaneously hypertensive rats (SHRs) were used. …”
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9976por Pilli, Roberto, Grassi, Giacomo, Kurz, Werner A., Viñas, Raúl Abad, Guerrero, Nuria Hue“…BACKGROUND: According to the post-2012 rules under the Kyoto protocol, developed countries that are signatories to the protocol have to estimate and report the greenhouse gas (GHG) emissions and removals from forest management (FM), with the option to exclude the emissions associated to natural disturbances, following the Intergovernmental Panel on Climate Change (IPCC) guidelines. …”
Publicado 2016
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9977Genomic expression profiling and bioinformatics analysis on diabetic nephrology with ginsenoside Rg3por Wang, Juan, Cui, Chunli, Fu, Li, Xiao, Zili, Xie, Nanzi, Liu, Yang, Yu, Lu, Wang, Haifeng, Luo, Bangzhen“…Cluster analysis, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were used to analyze the differentially expressed genes. …”
Publicado 2016
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9978por Pamungkas, Aryo D., Park, Changyoung, Lee, Sungyong, Jee, Sun Ha, Park, Youngja H.“…Then, the significant metabolites were identified using Metlin database and features were mapped on the human metabolic pathway mapping tool of the Kyoto Encyclopedia of Genes and Genomes (KEGG). RESULTS: Using metabolomics-wide association studies, metabolic changes were observed among control group and lung cancer patients. …”
Publicado 2016
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9979“…By combining comparative analysis with Kyoto Encyclopaedia of Genes and Genomes (KEGG), Conserved Domains Database (CDD), and Pfam annotations, we predicted 228 potential carbohydrate-active enzymes related to plant polysaccharide degradation (PPD). …”
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9980por Li, Jin, Wang, Ying, Wang, Lei, Dai, Xuefeng, Cong, Wang, Feng, Weixing, Xu, Chengzhen, Deng, Yulin, Wang, Yue, Skaar, Todd C., Liang, Hong, Liu, Yunlong“…Based on gene expression measurements, we extracted a subnetwork that showed enriched changes in molecular activity. Using the Kyoto Encyclopedia of Genes and Genomes (KEGG), we identified the crucial rifampin-regulated biological pathways and associated genes. …”
Publicado 2016
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