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10161por Li, Jialin, Luo, Hua, Liu, Xinkui, Zhang, Jingyuan, Zhou, Wei, Guo, Siyu, Chen, Xiuping, Liu, Yingying, Jia, Shanshan, Wang, Haojia, Li, Bingbing, Cheng, Guoliang, Wu, Jiarui“…Furthermore, bioinformatics resources from the database for annotation, visualization and integrated discovery (DAVID) were utilized for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. …”
Publicado 2020
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10162por Liu, Shiyi, Wang, Feiyan, Tan, Wei, Zhang, Li, Dai, Fangfang, Wang, Yanqing, Fan, Yaqi, Yuan, Mengqin, Yang, Dongyong, Zheng, Yajing, Deng, Zhimin, Liu, Yeqiang, Cheng, Yanxiang“…Then, we applied Gene Ontology (GO), the Kyoto Encyclopedia of Genes and Genomes (KEGG) and CIBERSORT, ESTIMATE algorithm, ssGSEA and somatic mutation analyses to reveal the impact of CTLA4 on the landscape of tumor-infiltrating lymphocytes (TILs) infiltration and genetic mutation. …”
Publicado 2020
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10163por Zhang, Jun, Wang, Ziwei, Zhao, Rong, An, Lanfen, Zhou, Xing, Zhao, Yingchao, Wang, Hongbo“…METHODS: The Cancer Genome Atlas was used to identify autophagy related genes (ARGs) that were differentially expressed in endometrial cancer tissue compared to healthy endometrial tissue. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes were referenced to identify important biological functions and signaling pathways related to these differentially expressed ARGs. …”
Publicado 2020
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10164por Jiao, Yubing, An, Mengnan, Li, Xiaodong, Yu, Man, Zhao, Xiuxiang, Xia, Zihao, Wu, Yuanhua“…The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses revealed that most up-regulated DEGs were involved in plant abiotic and biotic stresses. …”
Publicado 2020
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10165por Geng, Gui, Li, Renren, Stevanato, Piergiorgio, Lv, Chunhua, Lu, Zhengyu, Yu, Lihua, Wang, Yuguang“…Overall, 4,773 and 2,251 differentially expressed genes (DEGs) were identified in leaves and roots, respectively. Kyoto encyclopedia of genes and genomes (KEGG) analysis showed that genes involving cutin, suberine and wax biosynthesis, sesquiterpenoid and triterpenoid biosynthesis and flavonoid biosynthesis had simultaneously changed expression under low neutral salt or alkaline salt, so these genes may be related to stimulating sugar beet growth in both low salt treatments. …”
Publicado 2020
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10166por Xie, Zhenyu, Li, Xin, He, Yuzhen, Wu, Song, Wang, Shiyue, Sun, Jianjian, He, Yuchen, Lun, Yu, Zhang, Jian“…Epstein-Barr virus (EBV) infection was the most significantly enriched Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway for key module genes. …”
Publicado 2020
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10167por Nanda, Satyabrata, Yuan, San-Yue, Lai, Feng-Xia, Wang, Wei-Xia, Fu, Qiang, Wan, Pin-Jun“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed the target gene candidates of DE miRNAs (including osa-miR2871a-3p, osa-miR172a, osa-miR166a-5p, osa-miR2120, and osa-miR1859) that might be involved in the IR56 rice defense responses against BPH infestation. …”
Publicado 2020
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10168“…The functionalities of the differentially expressed ARGs were analyzed using Gene Ontology (GO) as well as the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. …”
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10169“…We found significant differences in EFS in adult AML patients when comparing intermediate and good, and poor and good risk adult AML patient subgroups and quartile expression levels of MORC4 and SAGE1, respectively. When examining Kyoto Encyclopedia of Genes and Genomes (KEGG) (2016) pathway data, we found that genes altered in AML were involved in key processes such as the evasion of apoptosis (BIRC5, WNT1) or the control of cell proliferation (SSX2IP, AML1-ETO). …”
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10170por Duan, Haibo, He, Huafang, Hu, Qian, Lin, Yingxin, Cao, Shuo, Lan, Xiaoshan, Li, Litao, Pang, Danmei“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that the ELF1- and CSDE1-associated target genes had different potential functions and signaling pathways. …”
Publicado 2020
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10171por Liu, Hongfei, Chen, Xiaohong, Yang, Xingjiu, Li, Mengyuan, Zhang, Wenlong, Zhang, Guoxin, Zhan, Xiangwen, Cao, Lin, Li, Weisha, Huang, Zhigang, Gao, Ran“…The growth of xenografts derived from hnRNP K-knockdown cells was also evaluated, and bioinformatics analyses were performed using the Gene Ontology and Kyoto Encyclopedia for Genes and Genomes databases to determine the possible downstream signaling pathways of hnRNP K. …”
Publicado 2020
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10172por Zhu, Jie, Wang, Han, Ma, Ting, He, Yan, Shen, Meng, Song, Wei, Wang, Jing-Jing, Shi, Jian-Ping, Wu, Meng-Yao, Liu, Chao, Wang, Wen-Jie, Huang, Yue-Qing“…Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed for functional enrichment analysis of DEIRGs. …”
Publicado 2020
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10173por Zhang, Wenqing, Zhang, Shengkui, Lu, Xianqin, Li, Can, Liu, Xingwang, Dong, Geyu, Xia, Tao“…A total of 3852 differentially expressed genes (DEGs) were identified in three periods of T1, T2, and T3 through RNA-seq analysis. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of all DEGs showed that the two most abundant metabolic pathways were phenylpropane metabolism, starch and sucrose metabolism, which were closely related to cell wall development, hemicellulose, lignin and cellulose synthesis. …”
Publicado 2020
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10174por Xu, Yuting, Qiao, Chen, He, Siying, Lu, Chen, Dong, Shiqi, Wu, Xiying, Yan, Ming, Zheng, Fang“…Metascape was used to perform Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses on mRNAs of the ceRNA network and to perform Protein-Protein Interaction (PPI) Network analysis on the String website to find candidate hub genes. …”
Publicado 2020
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10175“…However, the molecular mechanism of Runx2 regulating the pathological progression of keloids has not been elucidated. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that most of the differentially expressed genes (DEGs), including Runx2, were significantly enriched in the biological processes ‘Positive regulation of cell proliferation’, in the cellular components ‘Extracellular matrix’, in the molecular functions ‘Extracellular matrix structural constituents’ and in the KEGG ‘PI3K-Akt signaling pathway’. …”
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10176por Zhao, Haiyan, Wang, Jianshe, Qu, Yunfang, Peng, Renhai, Magwanga, Richard Odongo, Liu, Fang, Huang, Jinling“…Forty-two TDFs and 11 differentially expressed proteins (DEPs) were annotated by analysis in the genomic databases of G. austral, G. arboreum and G. hirsutum. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses were performed to better understand the functions of these TDFs and DEPs. …”
Publicado 2020
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10177por Liu, Man, Si, Qiufang, Ouyang, Songyun, Zhou, Zhigang, Wang, Meng, Zhao, Chunling, Yang, Ting, Wang, Yulin, Zhang, Xue, Xie, Wenbo, Dai, Liping, Li, Jitian“…Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were tested by R software (ClusterProfiler package). …”
Publicado 2020
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10178por Guo, Xiang, Ji, Jinyu, Jose Kumar Sreena, Goutham Sanker, Hou, Xiaoqiang, Luo, Yanan, Fu, Xianyun, Mei, Zhigang, Feng, Zhitao“…Based on the overlapping genes, we used Cytoscape 3.7.2 software to construct a protein–protein interactions (PPI) network and applied Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis to determine the mechanisms of the treatment. …”
Publicado 2020
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10179“…Functional analysis of differentially expressed (DE) circRNAs were processed by Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. …”
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10180por Zhao, Wenyuan, Wang, Jun, Luo, Qingxi, Peng, Wei, Li, Bin, Wang, Lei, Zhang, Chunfang, Duan, Chaojun“…The downstream DEmRNAs were then enriched in 405 Gene Ontology terms and 11 Kyoto Encyclopedia of Genes and Genomes pathways, which revealed their potential functions and mechanisms. …”
Publicado 2020
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