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11141por Fan, Lifei, Guo, Yuqin, Wu, Qingmei, Hu, Tingting, Chen, Xiaomei, Guo, Jing, Liu, Ying, Lu, Yuhui, Lin, Min“…Further, Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were performed for common targets, and a Drug-Component-Target-Pathway (D-C-T-P) network diagram was constructed. …”
Publicado 2023
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11142por Duan, Yuanyuan, Wu, Jiaqi, Wang, Fanfan, Zhang, Kaiqi, Guo, Xiaoliang, Tang, Tao, Mu, Sen, You, Jingmao, Guo, Jie“…Peiminine, peimine, tortifoline, hupehenine, korseveramine, delafrine, hericenone N-oxide, korseveridine, puqiedinone, pingbeinone, puqienine B, puqienine E, pingbeimine A, jervine, and ussuriedine levels were upregulated in IM02 and IM03, compared with IM01 (vigorous growth stage, early April). The Kyoto Encyclopedia of Genes and Genomes enrichment analysis indicated that the accumulation of steroidal alkaloid metabolites mainly occurred prior to IM02. …”
Publicado 2023
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11143por Yu, Yaping, Ding, Shun, Xu, Xiaoqing, Yan, Dongming, Fan, Yonghao, Ruan, Banzhan, Zhang, Xiaodian, Zheng, Liping, Jie, Wei, Zheng, Shaojiang“…The interactive genes were imported into the Visualization and Integrated Discovery database for Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) signal enrichment, and the hub genes were screened out. …”
Publicado 2023
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11144“…Gene set variation analysis (GSVA), gene set enrichment analysis (GSEA), Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were utilized to explore potential functions underlying the CuRLs signature. …”
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11145por Xia, Pengcheng, Ma, Huijun, Chen, Jing, Liu, Yingchao, Cui, Xiaolin, Wang, Cuicui, Zong, Shuai, Wang, Le, Liu, Yun, Lu, Zhiming“…We further performed the enrichment analyses of the DEGs based on Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) databases to identify the metabolic pathways with a significant difference. …”
Publicado 2023
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11146por Lee, Cheng-Chin, Lee, Ai-Wei, Wei, Po-Li, Liu, Yi-Shin, Chang, Yu-Jia, Huang, Chien-Yu“…GEO2R, STRING, CytoNCA (a plug-in of Cytoscape), and DAVID were used to analyze differentially expressed genes (DEGs), protein–protein interactions (PPIs), hub genes in PPIs, and gene ontology (GO)/Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. …”
Publicado 2023
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11147por Gao, Cuiyun, Pan, Huafeng, Ma, Fengjun, Zhang, Ze, Zhao, Zedan, Song, Jialing, Li, Wei, Fan, Xiangzhen“…We then established a drug-ingredients-gene symbols-disease (D-I-G-D) network and a protein–protein interaction (PPI) network using Cytoscape software, and we performed Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses using R software. …”
Publicado 2023
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11148por Peng, Yue, Li, Yixi, Zhang, Wei, ShangGuan, Yu, Xie, Ting, Wang, Kang, Qiu, Jing, Pu, Wenjun, Hu, Biying, Zhang, Xinzhou, Yin, Lianghong, Tang, Donge, Dai, Yong“…Pathway studies using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) showed that the specific eccDNA in ESRD was markedly enriched in cell junction and communication pathways. …”
Publicado 2023
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11149“…MPP(+)-TR1(the N2a cell over-expressed TR1-LV for 24 h then dealt with MPP(+)(1 mM) 48 h). From the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, we confirmed that the overexpression of TR1 in SN pars compacta cells decreased oxidative stress, apoptosis, DNA damage, and inflammatory response and increased NADPH, Na(+)-K(+)-ATP, and immune response in this PD model. …”
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11150por Chen, Lin, Cui, Yongmei, Yao, Youhua, An, Likun, Bai, Yixiong, Li, Xin, Yao, Xiaohua, Wu, Kunlun“…Gene ontology (GO) enrichment analysis revealed that the molecular function, biological process, and cell composition were enriched. The Kyoto Encyclopedia of Genes and Genomes (KEGG) results showed that the RNA transport pathway was mainly enriched. …”
Publicado 2023
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11151por Huang, Dongwei, Cai, Jiawei, Zhang, Chen, Jin, Rongshuai, Bai, Shaocheng, Yao, Fan, Ding, Haisheng, Zhao, Bohao, Chen, Yang, Wu, Xinsheng, Zhao, Huiling“…A total of 71 differential metabolites were matched, including stearic acid, betaine, arachidonic acid, L-malic acid, and indole. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of differential metabolites revealed 51 metabolic pathways, including synthesis and degradation of ketones, serine and threonine metabolism, tryptophan metabolism, and the citric acid cycle. …”
Publicado 2023
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11152por Jiang, Yunzhong, Zhang, Mengzhao, Wang, Lu, Zhang, Lu, Ma, Minghai, Jing, Minxuan, Li, Jianpeng, Song, Rundong, Zhang, Yuanquan, Yang, Zezhong, Zhang, Yaodong, Pu, Yuanchun, Qu, Xiaowei, Fan, Jinhai“…Furthermore, we used gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses to explore the molecular function of target genes. …”
Publicado 2023
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11153por Li, He, Yang, Lei, Wang, Yuanyuan, Wang, Lingchan, Chen, Gang, Zhang, Li, Wang, Dongchang“…Gene ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, gene set enrichment analysis (GSEA). …”
Publicado 2023
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11154por Lee, Jyh-Hong, Wang, Li-Chieh, Lin, Yu-Tsan, Yang, Yao-Hsu, Yu, Hsin-Hui, Hu, Ya-Chiao, Chiang, Bor-Luen“…Differentially expressed miRNA (DEmiRNA) were determined with DESeq2. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analysis was performed to determine functional pathways involved. …”
Publicado 2023
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11155“…In addition, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analyses were performed on HFIGs. …”
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11156por Lin, Lizhen, Li, Chengchen, Ren, Zongling, Qin, Yuzhi, Wang, Ruilong, Wang, Jia, Cai, Jianying, Zhao, Lanfeng, Li, Xiaobo, Cai, Yanfei, Xiong, Xingyao“…According to the KEGG pathway analysis, a total of 46 categorical metabolic pathways in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database were annotated to 101 DEGs found in potato roots. …”
Publicado 2023
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11157por Dou, Yaqing, Wei, Yilin, Zhang, Zhe, Li, Chenlei, Song, Chenglei, Liu, Yingke, Qi, Kunlong, Li, Xinjian, Li, Xiuling, Qiao, Ruimin, Wang, Kejun, Yang, Feng, Han, Xuelei“…In order to investigate the relationship between m(6)A and mRNA expression in the muscle of Queshan Black pigs at different periods, a combined analysis of MeRIP-Seq and RNA-Seq showed that 88 genes were significantly different at both levels. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes results showed that DEGs and DMGs were mainly involved in skeletal muscle tissue development, FoxO signaling pathway, MAPK signaling pathway, insulin signaling pathway, PI3K–Akt signaling pathway, and Wnt signaling pathway. …”
Publicado 2023
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11158por Zhang, Xuan, Wu, Tao, Zhou, Jinmei, Chen, Xiaoqiong, Dong, Chao, Guo, Zhangyou, Yang, Renfang, Liang, Rui, Feng, Qing, Hu, Ruixi, Li, Yunfeng, Ding, Rong“…Limma was used to obtain differential expression genes (DEGs) between CRLM and CRC from sequencing data and GSE22834, and Gene Ontology and Kyoto Encyclopedia of Genes and Genomes functional enrichment analyses were performed, respectively. …”
Publicado 2023
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11159por Chen, Jiao, Wang, Yunjian, Yang, Zhi, Liu, Danwen, Jin, Yao, Li, Xixi, Deng, Yuhang, Wang, Boya, Zhang, Zhifeng, Ma, Yubin“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses revealed that the candidate reference genes were significantly enriched in cellular metabolic process, protein metabolic process and ribosome in early development and normal adult tissues as well as in cellular localization and endocytosis in the hindgut under sulfide stress. …”
Publicado 2023
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11160“…DEGs were then used to examine gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. …”
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