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  1. 1161
    “…It is freely available as supplementary data online at MDPI.com and has been developed using ImageJ, a free image processing program that can run on any computer with a Java virtual machine, which is distributed for Windows, Mac, and Linux. It is routinely used in our labs to quantify viral infections in vitro, but can easily be used for other applications that require quantification of labeled cells.…”
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    QuantIF: An ImageJ Macro to Automatically Determine the Percentage of Infected Cells after Immunofluorescence
  2. 1162
    “…It is freely available at https://github.com/SchulzLab/TEPIC and can be used on Linux based systems. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    TEPIC 2—an extended framework for transcription factor binding prediction and integrative epigenomic analysis
  3. 1163
    “…XitoSBML is confirmed to run on most 32/64-bit operating systems: Windows, MacOS, and Linux.…”
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    XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images
  4. 1164
    por Sitto, Farrah, Battistuzzi, Fabia U
    Publicado 2020
    “…This protocol presents the usage of Roary, a Linux-native pangenome application. Roary is a straightforward software that provides 1) an overview about core and accessory genes for those interested in general trends and, also, 2) detailed information on gene presence/absence in each genome for in-depth analyses. …”
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    Estimating Pangenomes with Roary
  5. 1165
    “…The most frequently used routines are accessible by a set of easy-to-use command line utilities for a Linux environment. The full functionality of the package assumes knowledge of C++ or Python to assemble an application using this software library. …”
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    BioShell 3.0: Library for Processing Structural Biology Data
  6. 1166
    por Zeng, Taiping, Si, Bailu
    Publicado 2020
    “…The cognitive mapping process was recorded by a free screen recorder software on ubuntu Linux system. Neural activities of the head-direction cells and the grid cells, the local view templates of visual scenes, and experience map were included. …”
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    Video data for the cognitive mapping process of NeuroBayesSLAM system
  7. 1167
    “…Executable binaries and visualization are freely available for Linux operating systems, the source code is licensed under General Public License version 3.…”
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    MIAMI––a tool for non-targeted detection of metabolic flux changes for mode of action identification
  8. 1168
    “…A 10-fold cross-validation is used to evaluate the performance of the classifier. On a Linux workstation with one NVidia Titan X GPU, program code was written in Python using the TensorFlow package.…”
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    Comparative Analysis of CNN and RNN for Voice Pathology Detection
  9. 1169
    “…CrystalExplorer is a native cross-platform program supported on Windows, MacOS and Linux with the primary function of visualization and investigation of molecular crystal structures, especially through the decorated Hirshfeld surface and its corresponding two-dimensional fingerprint, and through the visualization of void spaces in the crystal via isosurfaces of the promolecule electron density. …”
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    CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals
  10. 1170
    “…We used an emulation-based platform, where we integrated QUIC and MQTT (using GO-based implementations) and compared their combined performance with the that exhibited by the traditional TCP/TLS approach. We used Linux containers as end devices, and the ns-3 simulator to emulate different network technologies, such as WiFi, cellular, and satellite, and varying conditions. …”
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    Even Lower Latency in IIoT: Evaluation of QUIC in Industrial IoT Scenarios †
  11. 1171
    “…We present a dataset of 13446 shell commands from 175 participants who attended cybersecurity training and solved assignments in the Linux terminal. Each acquired data record contains a command with its arguments and metadata, such as a timestamp, working directory, and host identification in the emulated training infrastructure. …”
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    Dataset of shell commands used by participants of hands-on cybersecurity training
  12. 1172
    “…AVAILABILITY AND IMPLEMENTATION: MMseqs2 taxonomy is part of the MMseqs2 free open-source software package available for Linux, macOS and Windows at https://mmseqs.com. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    Fast and sensitive taxonomic assignment to metagenomic contigs
  13. 1173
    “…AVAILABILITY AND IMPLEMENTATION: SpacePHARER is available as an open-source (GPLv3), user-friendly command-line software for Linux and macOS: https://github.com/soedinglab/spacepharer. …”
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    SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts
  14. 1174
    “…The pipeline can be broken easily into smaller processes for the purpose of parallelization and easily deployed in a Linux computational environment, thanks to software containerization, thus helping to ensure full reproducibility.…”
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    FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow
  15. 1175
    “…It can be accessed through any system where R is installed, including Windows, Mac and most Linux systems. EcoPLOT is free to use and can be accessed at https://github.com/cdsanchez18/EcoPLOT.…”
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    EcoPLOT: dynamic analysis of biogeochemical data
  16. 1176
    por Maglic, Jasmin B., Lavendomme, Roy
    Publicado 2022
    “…It was written in C++ and is available on Windows, macOS and Linux distributions.…”
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    MoloVol: an easy-to-use program for analyzing cavities, volumes and surface areas of chemical structures
  17. 1177
    por Davis, M. Wayne, Jorgensen, Erik M.
    Publicado 2022
    “…It is available for Mac, PC, and Linux-based platforms and can be downloaded at https://jorgensen.biology.utah.edu/wayned/ape/.…”
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    ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
  18. 1178
    por Laskowski, Roman A.
    Publicado 2022
    “…All data files and images are pre‐generated, rather than on‐the‐fly as in the web version, so can be easily accessed. The program runs on Linux, Windows, and mac operating systems and is freely available for academic use at https://www.ebi.ac.uk/thornton-srv/software/PDBsum1.…”
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    PDBsum1 : A standalone program for generating PDBsum analyses
  19. 1179
    “…Here we developed KARAJ, a fast and flexible Linux command-line tool to automate the end-to-end process of querying and downloading a wide range of genomic and transcriptomic sequence data types. …”
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    KARAJ: An Efficient Adaptive Multi-Processor Tool to Streamline Genomic and Transcriptomic Sequence Data Acquisition
  20. 1180
    “…We present the low latency and high data rate (LLHD) scheduler, which successfully makes scheduling decisions based on real-time information on latency, path loss, and capacity, and achieves around 25% higher throughput and 45% lower data transmission delay than Linux’s default MPTCP scheduler.…”
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    Low Latency and High Data Rate (LLHD) Scheduler: A Multipath TCP Scheduler for Dynamic and Heterogeneous Networks
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