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  1. 1421
    “…Neuronify is developed in C++ and QML using the cross-platform application framework Qt and runs on smart phones (Android, iOS) and tablet computers as well personal computers (Windows, Mac, Linux).…”
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    Neuronify: An Educational Simulator for Neural Circuits
  2. 1422
    por Mao, Hongliang, Wang, Hao
    Publicado 2017
    “…AVAILABILITY AND IMPLEMENTATION: The code of SINE_Scan is freely available at http://github.com/maohlzj/SINE_Scan, implemented in PERL and supported on Linux. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    SINE_scan: an efficient tool to discover short interspersed nuclear elements (SINEs) in large-scale genomic datasets
  3. 1423
    “…AVAILABILITY AND IMPLEMENTATION: NetLand can run under operating systems including Windows, Linux and OS X. The executive files and source code of NetLand as well as a user manual, example models etc. can be downloaded from http://netland-ntu.github.io/NetLand/. …”
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    NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential
  4. 1424
    “…The gene detection package (SHARKhunt) runs on a Linux system and requires only a set of raw DNA sequences (genomic, expressed sequence tag and/or genome survey sequence) as input. …”
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    metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
  5. 1425
    “…The system works together with existing electrophysiology data acquisition systems (for Macintosh, Windows, and Linux); it does not attempt to supplant them. Moreover, the process of assembling, modifying, and using the system constitutes a useful pedagogical exercise for students and researchers with no background but an interest in electronics and programming. …”
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    A Dynamic Clamp on Every Rig
  6. 1426
    “…AVAILABILITY AND IMPLEMENTATION: The software is implemented in Python 3 and runs in both Python 2.7 and 3.4—on Macintosh and Linux systems. It is freely available at https://github.com/nigyta/dfast_core/under the GPLv3 license with external binaries bundled in the software distribution. …”
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    DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
  7. 1427
    “…Source code in C++ and MPI running on Linux systems as well as a reference manual are available at https://sourceforge.net/projects/parbibit/.…”
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    ParBiBit: Parallel tool for binary biclustering on modern distributed-memory systems
  8. 1428
    “…CRISPRCasFinder can either be used online or as a standalone tool compatible with Linux operating system. All third-party software packages employed by the program are freely available. …”
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    CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
  9. 1429
    “…COEX-seq is freely available for academic purposes and can be run on Windows, Mac OS, and Linux operating systems. Source code, sample data sets, and supplementary documentation are available as well.…”
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    COEX-Seq: Convert a Variety of Measurements of Gene Expression in RNA-Seq
  10. 1430
    “…EasyCodeML is a stand‐alone package that is supported in Windows, Mac, and Linux operating systems, and is freely available at https://github.com/BioEasy/EasyCodeML.…”
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    EasyCodeML: A visual tool for analysis of selection using CodeML
  11. 1431
    “…AVAILABILITY AND IMPLEMENTATION: HeteroGenesis and w-Wessim are freely available under the GNU General Public Licence from https://github.com/GeorgetteTanner, implemented in Python and supported on linux and MS Windows. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    Simulation of heterogeneous tumour genomes with HeteroGenesis and in silico whole exome sequencing
  12. 1432
    “…The CABS-dock standalone source code, wiki with documentation and examples of use and installation instructions for Linux, macOS and Windows are available in the CABS-dock standalone repository at https://bitbucket.org/lcbio/cabsdock.…”
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    CABS-dock standalone: a toolbox for flexible protein–peptide docking
  13. 1433
    “…AVAILABILITY AND IMPLEMENTATION: The software is implemented in R and runs on Macintosh and Linux systems. It is freely available at https://github.com/kdri-genomics/Hayai-Annotation-Plants under the GPLv3 license. …”
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    Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants
  14. 1434
    por Joppich, Markus, Zimmer, Ralf
    Publicado 2019
    “…With bioGUI install modules and templates, installing and using CL tools is made possible for most scientists—even on Windows, due to bioGUI’s support for Windows Subsystem for Linux. In addition, bioGUI templates can easily be created, making the bioGUI framework highly rewarding for developers. …”
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    From command-line bioinformatics to bioGUI
  15. 1435
    por Hwang, Jaehyun, Yoo, Joon
    Publicado 2020
    “…Finally, our experimental results, conducted on a Linux testbed and real-world cellular/Wi-Fi, show that the proposed scheme requires only half or less memory to achieve the performance of MPTCP.…”
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    A Memory-Efficient Transmission Scheme for Multi-Homed Internet-of-Things (IoT) Devices
  16. 1436
    “…The software source code and binaries for Windows, MacOS, and Linux are freely available at https://avis-md.github.io/.…”
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    Dataflow programming for the analysis of molecular dynamics with AViS, an analysis and visualization software application
  17. 1437
    por Bradley, Thomas, Moxon, Simon
    Publicado 2020
    “…The tool is implemented using the Python and R programming languages, and is supported on GNU/Linux operating systems. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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    FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals
  18. 1438
    por Hachaj, Tomasz
    Publicado 2020
    “…Developing and evaluating the proposed facial image annotation algorithm and its implementation, which is easily portable between various hardware and operating systems (virtually the same code works both on high-end PCs and microcomputers using the Windows and Linux platforms) and which is dedicated for low power consumption devices without coprocessors, is the main and novel contribution of this research.…”
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    A Method for Human Facial Image Annotation on Low Power Consumption Autonomous Devices
  19. 1439
    “…Most Red-masked sequences could be successfully classified by sequence similarity, with the complete protocol taking less than 2 h on a desktop Linux box. A guide to curating your own repeat libraries and the scripts for masking and annotating plant genomes can be obtained at https://github.com/Ensembl/plant-scripts.…”
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    K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes
  20. 1440
    “…AVAILABILITY AND IMPLEMENTATION: The Sciope Python3 toolbox is freely available on https://github.com/Sciope/Sciope, and has been tested on Linux, Windows and macOS platforms. SUPPLEMENTARY INFORMATION: Supplementary information is available at Bioinformatics online.…”
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    Scalable machine learning-assisted model exploration and inference using Sciope
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