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  1. 1561
    “…CLOTU is implemented in a Linux computer cluster and is freely accessible to academic users through the Bioportal web-based bioinformatics service (http://www.bioportal.uio.no).…”
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    CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
  2. 1562
    “…The package has no external dependencies besides Matlab or Octave, is straightforward to install and supports of variety of operating systems (Linux, Windows, Mac). We ran several benchmark experiments on a public database including 200 subjects, using a pipeline for the preprocessing of functional magnetic resonance images (fMRI). …”
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    The pipeline system for Octave and Matlab (PSOM): a lightweight scripting framework and execution engine for scientific workflows
  3. 1563
    “…The results obtained are comparable to those obtained using state-of-the-art Poisson-Boltzmann solvers. A Linux executable with example input and output files is provided as supplementary material.…”
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    Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii
  4. 1564
    por Shealy, Paul, Valafar, Homayoun
    Publicado 2012
    “…The C++ source code for msTALI is available for Linux on the web at http://ifestos.cse.sc.edu/mstali.…”
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    Multiple structure alignment with msTALI
  5. 1565
    “…This software can be run locally on any Windows, Linux or Mac OS computer with 32-bit architecture compatibility. …”
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    NucBase, an easy to use read mapper for small RNAs
  6. 1566
    “…It is designed to run under MPI on a cluster of 64-bit Linux machines running Red Hat 4.x, or on a multi-core OSX system. …”
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    Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1
  7. 1567
    “…The different software packages, including a server-indepenent version as well as a web server for Windows and Linux based systems, are available at http://code.google.com/p/biographer/ under the open-source license LGPL. …”
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    Biographer: web-based editing and rendering of SBGN compliant biochemical networks
  8. 1568
    “…Source code for the underlying algorithms, implemented in COMET and supported on linux, can be downloaded at the server website.…”
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    RNAiFold: a web server for RNA inverse folding and molecular design
  9. 1569
    “…Depositors can rebuild their databases by downloading a Linux live operating system (http://www.bioslax.com), preinstalled with bioinformatics and UNIX tools. …”
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    Simple re-instantiation of small databases using cloud computing
  10. 1570
    “…Our algorithm was developed with standard C++ and is available in Linux and MS Windows formats in the STL library. …”
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    Integrative Gene Network Construction to Analyze Cancer Recurrence Using Semi-Supervised Learning
  11. 1571
    “…The software runs on all common operating systems (Microsoft Windows, Mac OS X, Linux), on standard personal computers, and sequence analysis of 1–2 million reads can be accomplished in 10–15 min, a fraction of the time of competing software. …”
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    The antibody mining toolbox: An open source tool for the rapid analysis of antibody repertoires
  12. 1572
    “…TREVA is flexible and easy to use, and can be customised by Linux-based extensions if required. TREVA can also be deployed on the cloud (cloud computing), enabling instant access without investment overheads for additional hardware. …”
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    Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment
  13. 1573
    “…The web interface was developed using Linux-Apache-MySQL-PHP (LAMP) software bundle. User-friendly browse, search, advanced search and useful analysis tools are also provided on the web interface. …”
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    VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets
  14. 1574
    “…Three-dimensional quantitative structure-activity relationships and docking studies were performed with appropriate options of maestro 9.6 version installed in HP Z820 workstation with CentOS 6.3 (Linux). A model with partial least squares factor 5, standard deviation 0.2482, R(2) = 0.9502 and variance ratio of regression 122 has been found as the best statistical model.…”
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    Three-dimensional quantitative structure-activity relationships and docking studies of some structurally diverse flavonoids and design of new aldose reductase inhibitors
  15. 1575
    “…The FMiR is running under Linux operating platform on high performance server accessible at URL http://mail.nbfgr.res.in/fmir.…”
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    FMiR: A Curated Resource of Mitochondrial DNA Information for Fish
  16. 1576
    “…Tentacle is written for Linux in Python 2.7 and is published as open source under the GNU General Public License (v3). …”
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    Tentacle: distributed quantification of genes in metagenomes
  17. 1577
    “…The current version of owlcpp is supported under Linux, OSX, and Windows platforms and provides an API for Python. …”
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    owlcpp: a C++ library for working with OWL ontologies
  18. 1578
    “…It is available via the Internet using Java Web Start and runs on Macintosh, PC and Linux operating systems with the Java 1.4 virtual machine.…”
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    Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
  19. 1579
    “…Further, BluePyOpt provides methods for setting up both small- and large-scale optimisations on a variety of platforms, ranging from laptops to Linux clusters and cloud-based compute infrastructures. …”
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    BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience
  20. 1580
    “…PASMet is freely available with no login requirement at http://pasmet.riken.jp/ from major web browsers on Windows, Mac and Linux operating systems.…”
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    PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems
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