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  1. 1581
    “…Cljam can run in a Java runtime environment (e.g., Windows, Linux, Mac OS X) with Clojure. CONCLUSIONS: Cljam can process and analyze SAM/BAM files in parallel and at high speed. …”
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    cljam: a library for handling DNA sequence alignment/map (SAM) with parallel processing
  2. 1582
    por Stempor, Przemyslaw, Ahringer, Julie
    Publicado 2016
    “…SeqPlots is available as a GUI application for Mac or Windows and Linux, or as an R/Bioconductor package. It can also be deployed on a server for remote and collaborative usage. …”
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    SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics
  3. 1583
    “…Meta-aligner is implemented in C++ and runs in popular POSIX-like operating systems such as Linux. CONCLUSIONS: Meta-aligner achieves high recall rates and precisions especially for long reads and high error rates. …”
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    Meta-aligner: long-read alignment based on genome statistics
  4. 1584
    “…MAPPI-DAT is cross-platform and can be ran on Microsoft Windows, Linux and OS X/macOS. The source code and a Microsoft Windows executable are freely available under the permissive Apache2 open source license at https://github.com/compomics/MAPPI-DAT. …”
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    MAPPI-DAT: data management and analysis for protein–protein interaction data from the high-throughput MAPPIT cell microarray platform
  5. 1585
    “…The R package has been tested for R 3.2.0 under Linux, Windows and Mac OS X. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-017-1731-8) contains supplementary material, which is available to authorized users.…”
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    sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters
  6. 1586
    “…Mordred can be easily installed and used in the command line interface, as a web application, or as a high-flexibility Python package on all major platforms (Windows, Linux, and macOS). Performance benchmark results show that Mordred is at least twice as fast as the well-known PaDEL-Descriptor and it can calculate descriptors for large molecules, which cannot be accomplished by other software. …”
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    Mordred: a molecular descriptor calculator
  7. 1587
    por Marco, Antonio
    Publicado 2018
    “…The software is written in Perl and runs on 64-bit Unix computers (Linux and MacOS X). Users with no computing experience can also run the program in a dedicated web-server by uploading custom data, or browse pre-computed predictions. …”
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    SeedVicious: Analysis of microRNA target and near-target sites
  8. 1588
    “…This platform comprises a dual-core Advanced Reduced Instruction Set Computer Machine (ARM) architecture running a Linux operating system and FPGA fabric. A FPGA-based hardware implementation of the discrete wavelet transform is realized to accelerate processing the AE measurements. …”
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    Development of A Low-Cost FPGA-Based Measurement System for Real-Time Processing of Acoustic Emission Data: Proof of Concept Using Control of Pulsed Laser Ablation in Liquids
  9. 1589
    “…AVAILABILITY AND IMPLEMENTATION: SimPhospho is open source and it is available for Windows, Linux and Mac operating systems. The software and its user’s manual with detailed description of data analysis as well as test data can be found at https://sourceforge.net/projects/simphospho/. …”
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    SimPhospho: a software tool enabling confident phosphosite assignment
  10. 1590
    por Gorjanc, Gregor, Hickey, John M
    Publicado 2018
    “…AVAILABILITY AND IMPLEMENTATION: Executable versions of AlphaMate for Windows, Mac and Linux platforms are available at http://www.AlphaGenes.roslin.ed.ac.uk/AlphaMate.…”
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    AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs
  11. 1591
    “…For a lightweight implementation, qCon develops its own scheduling framework on the Linux bridge by interposing qCon’s scheduling interface on the frame processing function of the bridge. …”
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    qCon: QoS-Aware Network Resource Management for Fog Computing
  12. 1592
    “…On these datasets, the model building on a mid-range Linux server takes approximately 3 to 5 hours per phenotype if assembled genomes are used and 10 hours per phenotype if raw sequencing data are used. …”
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    A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria
  13. 1593
    “…Also, it is a multi-platform application able to operate on Linux, Windows, and macOS.…”
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    IMOS: improved Meta-aligner and Minimap2 On Spark
  14. 1594
    “…It is cross platform and has been tested on Linux, macOS and Windows. Its graphical user interface is browser based, through a Jupyter notebook. …”
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    refnx: neutron and X-ray reflectometry analysis in Python
  15. 1595
    “…RTHybrid has been developed to run over Linux operating systems supporting both Xenomai 3 and Preempt-RT real-time patches, and thus allowing an easy implementation in any laboratory. …”
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    RTHybrid: A Standardized and Open-Source Real-Time Software Model Library for Experimental Neuroscience
  16. 1596
    “…SMAC can easily be customised/expanded and is distributed as a Docker container (https://hub.docker.com/r/hfx320/smac) ready-to-use on Windows, Mac and Linux OS. SMAC’s functionalities have already been adapted and integrated into the Breast Cancer Now Tissue Bank bioinformatics platform and the Pancreatic Expression Database.…”
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    SMAC, a computational system to link literature, biomedical and expression data
  17. 1597
    “…Here, we document the Transitivity code, written in Python, a free open-source code compatible with Windows, Linux and macOS platforms. Procedures are made available to evaluate the phenomenology of the temperature dependence of rate constants for processes from the Arrhenius and Transitivity plots. …”
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    “Transitivity”: A Code for Computing Kinetic and Related Parameters in Chemical Transformations and Transport Phenomena
  18. 1598
    “…Here, we present CircParser, a simple and fast Unix/Linux pipeline that uses the outputs from the most common circular RNAs in silico prediction tools (CIRI, CIRI2, CircExplorer2, find_circ, and circFinder) to annotate circular RNAs, assigning presumptive host genes from local or public databases such as National Center for Biotechnology Information (NCBI). …”
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    CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms
  19. 1599
    “…It works under Windows 64-bit systems and recent Linux distributions even on a consumer level laptop with a CUDA-enabled video card using recent NVIDIA drivers. …”
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    3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images
  20. 1600
    “…The workflow is based on free and open—source software, namely R, Python, Linux shell scripts, the Geospatial Data Abstraction Library, custom FORTRAN, C++, and the GNU Make utilities. …”
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    A Workflow for Automated Satellite Image Processing: from Raw VHSR Data to Object-Based Spectral Information for Smallholder Agriculture
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