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  1. 1661
    “…Its special features make it a very useful tool for analysis of tertiary structures of RNAs. RNAmap2D for Windows/Linux/MacOSX is freely available for academic users at http://iimcb.genesilico.pl/rnamap2d.html…”
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    RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures
  2. 1662
    “…The program has been tested on Windows, Mac, and Linux operating systems, and is implemented both as an executable JAR file and java WebStart. …”
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    JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison
  3. 1663
    “…A webserver example, standalone versions for MacOS X, Linux and Windows, source code, screen shots, videos and documentation are available at the address: http://unitymol.sourceforge.net/.…”
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    Game On, Science - How Video Game Technology May Help Biologists Tackle Visualization Challenges
  4. 1664
    “…The performance of aBEAT has been extensively evaluated on a large number of longitudinal MR T1 images which include normal and dementia subjects, achieving very promising results. A Linux-based standalone package of aBEAT is now freely available at http://www.nitrc.org/projects/abeat.…”
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    aBEAT: A Toolbox for Consistent Analysis of Longitudinal Adult Brain MRI
  5. 1665
    “…The proposed OMDR and GCVC were implemented in a C/C++ program, executables of which are freely available for Linux, Windows and MacOS upon request for non-commercial research institutions.…”
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    Identification of multiple gene-gene interactions for ordinal phenotypes
  6. 1666
    “…We succeeded in implementing libSBMLSim as a platform-independent library that can run on most common operating systems (Windows, MacOSX and Linux) and also provides several language bindings (Java, C#, Python and Ruby). …”
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    LibSBMLSim: a reference implementation of fully functional SBML simulator
  7. 1667
    “…They are both free and open source, available (http://biophysique.mnhn.fr/tango) for Linux, Microsoft Windows and Macintosh OSX. Distribution is under the GPL v.2 licence. …”
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    TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization
  8. 1668
    “…Availability: PRTPrimer is available in two forms: a Perl script (version 5.14 and higher) that can be run from the command line on Linux systems and as a service on the PRTPrimer web site (www.prtprimer.org). …”
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    Automated design of paralogue ratio test assays for the accurate and rapid typing of copy number variation
  9. 1669
    “…RESULTS: In order to ease the use of similarity networks in the community of evolutionary biologists, we introduce a software program, EGN, that runs under Linux or MacOSX. EGN automates the reconstruction of gene and genome networks from nucleic and proteic sequences. …”
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    EGN: a wizard for construction of gene and genome similarity networks
  10. 1670
    “…The cellXpress installation packages for 64-bit Windows and Linux, user manual, installation guide, and datasets used in this analysis can be downloaded freely from http://www.cellXpress.org.…”
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    cellXpress: a fast and user-friendly software platform for profiling cellular phenotypes
  11. 1671
    por Gardner, Shea N., Hall, Barry G.
    Publicado 2013
    “…The kSNP v2 software finds single nucleotide polymorphisms (SNPs) in whole genome data. kSNP v2 has numerous improvements over kSNP v1 including SNP gene annotation; better scaling for draft genomes available as assembled contigs or raw, unassembled reads; a tool to identify the optimal value of k; distribution of packages of executables for Linux and Mac OS X for ease of installation and user-friendly use; and a detailed User Guide. …”
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    When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes
  12. 1672
    “…DyGloSA can be run on Windows and Linux systems, -32 and -64 bits.…”
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    Switch of Sensitivity Dynamics Revealed with DyGloSA Toolbox for Dynamical Global Sensitivity Analysis as an Early Warning for System's Critical Transition
  13. 1673
    “…Moreover, the total execution time for all the case studies is about 1 min or less in a Linux Dell workstation with 12 Intel Xeon 3.47 GHz CPU cores and 96 GB of RAM.…”
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    Toward a real time multi-tissue Adaptive Physics-Based Non-Rigid Registration framework for brain tumor resection
  14. 1674
    “…RESULTS: We present FastIndep, a fast random heuristic algorithm for finding a maximal independent set of nodes in an arbitrary undirected graph along with an efficient implementation in C++. On a 64 bit Linux or MacOS platform the execution time is a few minutes, even with a graph of several thousand nodes. …”
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    Identifying large sets of unrelated individuals and unrelated markers
  15. 1675
    “…Pep2Path is freely available from http://pep2path.sourceforge.net/, implemented in Python, licensed under the GNU General Public License v3 and supported on MS Windows, Linux and Mac OS X.…”
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    Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products
  16. 1676
    “…PRISE2 is equipped with a graphical, user-friendly interface, and it runs on Windows, Macintosh or Linux machines. RESULTS: PRISE2 has been tested on two very similar strains of the fungus Dactylella oviparasitica, and it was able to create highly selective primers and probes for each of them, demonstrating the ability to create useful sequence-selective assays. …”
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    PRISE2: Software for designing sequence-selective PCR primers and probes
  17. 1677
    “…Distributed processing is at the core of APP, allowing the processing of very large datasets using any combination of Windows/Linux physical or virtual computing resources. CONCLUSIONS: APP provides distributed computing nodes that are simple to set up, greatly relieving the need for separate IT competence when handling large datasets. …”
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    APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools
  18. 1678
    “…However, these programs that are designed for a LINUX environment require some dedicated programming skills and have no options for visualisation of the resulting mapped sequence reads. …”
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    Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics
  19. 1679
    “…In order to eliminate the legacy application server of the old platform and to accommodate new changes, the website has been completely rewritten in the LAMP (Linux, Apache, MySQL and PHP) environment. The improved user interface incorporates current third-party plugins for better visualization of protein and ligand molecules, and it provides features like sorting, filtering and filtered downloads. …”
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    Recent improvements to Binding MOAD: a resource for protein–ligand binding affinities and structures
  20. 1680
    “…CONCLUSIONS: MAESTRO is a versatile tool in the field of stability change prediction upon point mutations. Executables for the Linux and Windows operating systems are freely available to non-commercial users from http://biwww.che.sbg.ac.at/MAESTRO. …”
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    MAESTRO - multi agent stability prediction upon point mutations
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