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  1. 1701
    “…It is freely available for Linux on the web at https://github.com/KerstenDoering/PubMedPortable and for other operating systems as a virtual container. …”
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    PubMedPortable: A Framework for Supporting the Development of Text Mining Applications
  2. 1702
    “…RNA2DNAlign is freely available from http://github.com/HorvathLab/NGS as a self-contained binary package for 64-bit Linux systems.…”
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    RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data
  3. 1703
    “…Parallel-META 3 is implemented in C/C++ and R, and integrated into an executive package for rapid installation and easy access under Linux and Mac OS X. Both binary and source code packages are available at http://bioinfo.single-cell.cn/parallel-meta.html.…”
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    Parallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities
  4. 1704
    “…For a given novel gene model, such local context-oriented strategy allows LocExpress to estimate its FPKMs in hundreds of samples within minutes on a standard Linux box, making an online web server possible. …”
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    LocExpress: a web server for efficiently estimating expression of novel transcripts
  5. 1705
    “…Using Jenkins-CI, we integrated CellProfiler, an open-source image-processing platform, with various HCS utilities and a high-performance Linux cluster. The platform is web-accessible, facilitates access and sharing of high-performance compute resources, and automates previously cumbersome data and image-processing tasks. …”
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    Jenkins-CI, an Open-Source Continuous Integration System, as a Scientific Data and Image-Processing Platform
  6. 1706
    “…XCE is freely available and works on any Linux and Mac OS X system, and the only dependency is to have the latest version of CCP4 installed. …”
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    The XChemExplorer graphical workflow tool for routine or large-scale protein–ligand structure determination
  7. 1707
    “…GAMOLA2 is intended to be run under a Linux environment, whereas the subsequent visualization and manual curation in Artemis is mobile and platform independent. …”
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    GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes
  8. 1708
    por Kim, Bongsong, Beavis, William D
    Publicado 2017
    “…Numericware i is freely available for Windows and Linux under CC-BY 4.0 license at https://figshare.com/s/f100f33a8857131eb2db.…”
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    Numericware i: Identical by State Matrix Calculator
  9. 1709
    “…Neopeptide Analyser is available as a Java application for Mac, Windows and Linux. The analysis features and ease of use encourages data exploration, which could aid the discovery of novel pathways in extracellular matrix degradation, the identification of potential biomarkers and as a tool to investigate matrix turnover. …”
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    Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data
  10. 1710
    “…RESULTS: SurvivalGWAS_SV is an easy to use software implemented using C# and run on Linux, Mac OS X & Windows operating systems. SurvivalGWAS_SV is able to handle large scale genome-wide data, allowing for imputed genotypes by modelling time to event outcomes under a dosage model. …”
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    SurvivalGWAS_SV: software for the analysis of genome-wide association studies of imputed genotypes with “time-to-event” outcomes
  11. 1711
    por Xia, Xuhua
    Publicado 2017
    “…ARSDA is freely available for Windows, Linux. and Macintosh computers at http://dambe.bio.uottawa.ca/ARSDA/ARSDA.aspx.…”
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    ARSDA: A New Approach for Storing, Transmitting and Analyzing Transcriptomic Data
  12. 1712
    “…AVAILABILITY AND IMPLEMENTATION: The PySB/cupSODA interface has been integrated into the PySB modeling framework (version 1.4.0), which can be installed from the Python Package Index (PyPI) using a Python package manager such as pip. cupSODA source code and precompiled binaries (Linux, Mac OS/X, Windows) are available at github.com/aresio/cupSODA (requires an Nvidia GPU; developer.nvidia.com/cuda-gpus). …”
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    GPU-powered model analysis with PySB/cupSODA
  13. 1713
    “…Our open-source pipeline, DROIDS (Detecting Relative Outlier Impacts in Dynamic Simulations), works in conjunction with existing molecular modeling software to convert any Linux gaming personal computer into a “comparative computational microscope” for observing the biophysical effects of mutations and other chemical changes in proteins. …”
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    DROIDS 1.20: A GUI-Based Pipeline for GPU-Accelerated Comparative Protein Dynamics
  14. 1714
    “…Furthermore, compiled versions of the code are available as executables which can be run directly in Linux, Windows and Mac OSX operating systems. Contact: dominic.waithe@imm.ox.ac.uk…”
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    FoCuS-point: software for STED fluorescence correlation and time-gated single photon counting
  15. 1715
    “…The framework is distributed as a Docker image with the tools ready to be run without any installation step besides Docker, and is available on Linux, macOS, and Microsoft Windows. The embedded computational workflows are edited with a Jupyter web interface, enabling the inclusion of textual annotations, along with the explicit code to execute, as well as the visualization of the results. …”
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    The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  16. 1716
    “…AVAILABILITY AND IMPLEMENTATION: aliFreeFold was implemented in C++. Source code and Linux binary are freely available at https://github.com/UdeS-CoBIUS/aliFreeFold. …”
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    aliFreeFold: an alignment-free approach to predict secondary structure from homologous RNA sequences
  17. 1717
    “…This update also enables transmitting and analyzing ‘big’ data empowered by (a) the implementation of multi-threading chunked file uploading, which can be paused and resumed, using HTML5 APIs and (b) the allocation of significantly more computing nodes to its back-end Linux cluster. The updated psRNATarget server has clear, compelling and user-friendly interfaces that enhance user experiences and present data clearly and concisely. …”
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    psRNATarget: a plant small RNA target analysis server (2017 release)
  18. 1718
    “…The specifications of the AI were as follows: operating system, Linux; neural network, GoogLeNet; framework, Caffe; graphic processor unit, Geforce GTX TITAN X (NVIDIA Co., USA). …”
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    Artificial intelligence diagnosis of Helicobacter pylori infection using blue laser imaging-bright and linked color imaging: a single-center prospective study
  19. 1719
    “…This software is open‐source and compatible with Windows, Mac OS, and Linux. For proof‐of‐concept, a database with over 3,000 DVHs from a single physician's head & neck practice was built. …”
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    DVH Analytics: A DVH database for clinicians and researchers
  20. 1720
    por Wang, Meng, Kong, Lei
    Publicado 2019
    “…The pblat tool is easy to install and can run on Linux and Mac OS systems. In addition, we provide a cluster version of pblat (pblat-cluster) running on computing clusters with MPI support. …”
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    pblat: a multithread blat algorithm speeding up aligning sequences to genomes
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