“…Using optimized mapping criteria, over 70% of quality PET sequences were mapped specifically to the genome sequences. With a 2.4 GHz LINUX machine, it takes approximately six hours to process one million PETs from extraction to mapping. …”
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“…UCSF Chimera is free for non-commercial use and is available for Microsoft Windows, Apple Mac OS X, Linux, and other platforms from .…”
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“…It is available for running on Linux or UNIX systems. The program, test data, and user manual are available at and as Additional files.…”
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“…METHODS: The on-line version of IATROTEK is implemented on a Linux-based server running PostgreSQL database server and Apache web server. …”
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“…FLAME is implemented, together with all the above-mentioned algorithms, in a C++ software with graphical interface for Linux and Windows, capable of handling very large datasets, named Gene Expression Data Analysis Studio (GEDAS), freely available under GNU General Public License. …”
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“…The msBayes pipeline is comprised of several C and R programs that are run with a Perl "front-end" and runs on Linux, Mac OS-X, and most POSIX systems. Although the current implementation is for a single locus per species-pair, future implementations will allow analysis of multi-loci data per species pair.…”
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“…The utilization of high performance computing resources including ScaLAPACK package, supercomputer and Linux PC cluster in our implementations and experiments significantly reduces the amount of computation time that is otherwise needed on a single workstation. …”
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“…DChip software has been ported on Linux platform and modified, using appropriate parallelization strategies, to permit its execution on both cluster environments and Grid infrastructures. …”
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“…The software is freely downloadable for Windows, Linux and Mac OS X systems at .…”
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“…Indexed MegaBLAST has been used in production on NCBI's Web BLAST service to search one version of the human and mouse genomes since October 2007. The Linux command-line executables for blastn and makembindex, documentation, and some query sets used to carry out the tests described below are available in the directory: ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/indexed_megablast Contact: schaffer@helix.nih.gov Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…It was written in JAVA on Globus Toolkit 4 to build the grid infrastructure based on GNU/Linux computer grid nodes. A test was carried out and the results are shown for the named entity recognition search of symptoms and pathologies. …”
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“…BACKGROUND: Modern chemistry laboratories operate with a wide range of software applications under different operating systems, such as Windows, LINUX or Mac OS X. Instead of installing software on different computers it is possible to install those applications on a single computer using Virtual Machine software. …”
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“…OrgConv is available in two forms; source code can be installed and run on a Linux platform and a web interface is available on multiple operating systems. …”
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“…It was then installed on two Linux servers: a first server for testing and validation of different modules, and a second one for the deployed full implementation. …”
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“…The pipeline is implemented with a combination of Perl, Bourne Shell and MySQL and is compatible with Linux and other Unix systems. Contact: king.jordan@biology.gatech.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…Implemented in Matlab and supported on Linux and MS Windows.…”
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“…The psRNATarget server is designed for high-throughput analysis of next-generation data with an efficient distributed computing back-end pipeline that runs on a Linux cluster. The server front-end integrates three simplified user-friendly interfaces to accept user-submitted or preloaded small RNAs and transcript sequences; and outputs a comprehensive list of small RNA/target pairs along with the online tools for batch downloading, key word searching and results sorting. …”
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“….: 1 760 051 Distribution format: tar.gz Programming language: Fortran 77 Computer: Workstation, PC Operating system: Linux RAM: 524 288 000 Bytes Classification: 11.1 External routines: LoopTools 2.2 (http://www.feynarts.de/looptools/), SLHALib 2.2 (http://www.feynarts.de/slha/). …”
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“…Our algorithm was developed with standard C++ and is available in Linux and MS Windows format in the STL library. It is freely available at: http://embio.yonsei.ac.kr/~Park/mgvd.php.…”
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“…The package is provided with plots and tables to help the user visualize and interpret the results. The Windows, Linux and MacOS versions of the package, together with the documentation are available on the website http://cran.r-project.org/web/packages/sdef/index.html.…”
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