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  1. 1801
    “…The software iNA is freely available as executable binaries for Linux, MacOSX and Microsoft Windows, as well as the full source code under an open source license.…”
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    Intrinsic Noise Analyzer: A Software Package for the Exploration of Stochastic Biochemical Kinetics Using the System Size Expansion
  2. 1802
    “…We have tested the server software on a low-cost linux-based server for image volumes up to 135GB and 64 simultaneous users. …”
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    Web tools for large-scale 3D biological images and atlases
  3. 1803
    “…Our software has been developed and tested on Windows, Mac, and Linux platforms and is available publicly under an open source BSD license (https://github.com/krm15/ACME).…”
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    ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes
  4. 1804
    “…In addition to MapReduce programs, Cloudgene can also be used to launch predefined systems (e.g. Cloud BioLinux, RStudio) in public clouds. Currently, five different bioinformatic programs using MapReduce and two systems are integrated and have been successfully deployed. …”
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    Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds
  5. 1805
    “…The program is available in three common operating systems, Linux, Mac and PC. Moreover, we have built a dedicated website, http://bioinformatics.mdanderson.org/main/BM-Map, which includes free downloads, detailed tutorials and illustration examples. …”
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    BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data
  6. 1806
    “…The server-side SBSINumerics runs on any Unix-based operating system; both SBSIVisual and SBSIDispatcher are written in Java and are platform independent, allowing use on Windows, Linux and Mac OS X. The SBSI project website at http://www.sbsi.ed.ac.uk provides documentation and tutorials. …”
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    SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology
  7. 1807
    “…In silico analysis was conducted by calculating molecular descriptors using the MOE software running on a Linux workstation. The “drug-likeness” of the isolated compounds was assessed using Lipinski criteria, from computed molecular properties of the geometry optimized structures. …”
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    New Antimalarial Hits from Dacryodes edulis (Burseraceae) - Part I: Isolation, In Vitro Activity, In Silico “drug-likeness” and Pharmacokinetic Profiles
  8. 1808
    “…As an interactive and highly customizable application, ModuleRole requires no expert knowledge in graph theory on the user side and can be used in both Linux and Windows system, thus a very useful tool for biologist to analyze and visualize PPI networks from databases such as BioGRID. …”
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    ModuleRole: A Tool for Modulization, Role Determination and Visualization in Protein-Protein Interaction Networks
  9. 1809
    “…It also provides access to Windows and Linux executable files of the evaluation software and most of the algorithms that competed in the challenge. …”
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    A benchmark for comparison of cell tracking algorithms
  10. 1810
    “…Availability and implementation: The software for PatternCNV is implemented using Perl and R, and can be used in Mac or Linux environments. Software and user manual are available at http://bioinformaticstools.mayo.edu/research/patterncnv/, and R package at https://github.com/topsoil/patternCNV/. …”
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    PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data
  11. 1811
    por Sarovich, Derek S, Price, Erin P
    Publicado 2014
    “…FINDINGS: We describe SPANDx (Synergised Pipeline for Analysis of NGS Data in Linux), a new tool for high-throughput comparative analysis of haploid WGS datasets comprising one through thousands of genomes. …”
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    SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
  12. 1812
    “…MODISTools can be used on Windows, Mac, and Linux platforms, and is available from CRAN and GitHub (https://github.com/seantuck12/MODISTools).…”
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    MODISTools – downloading and processing MODIS remotely sensed data in R
  13. 1813
    “…Availability and implementation: The RVboost package is implemented to readily run in Mac or Linux environments. The software and user manual are available at http://bioinformaticstools.mayo.edu/research/rvboost/. …”
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    RVboost: RNA-seq variants prioritization using a boosting method
  14. 1814
    “…The software implementation is available at https://claczny.github.io/VizBin under the BSD License (four-clause) and runs under Microsoft Windows™, Apple Mac OS X™ (10.7 to 10.10), and Linux. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40168-014-0066-1) contains supplementary material, which is available to authorized users.…”
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    VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
  15. 1815
    “…ImmunediveRsity is open source and free for academic purposes and it runs on 64 bit GNU/Linux and MacOS. Available at: https://bitbucket.org/ImmunediveRsity/immunediversity/…”
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    Reconstructing and mining the B cell repertoire with ImmunediveRsity
  16. 1816
    “…Here, we developed an in silico method of searching NGS raw sequence reads to detect this mutation, without the need to recalculate sequence alignments or to screen every sample by PCR. METHODS: The Linux program grep was used to search for a 23 bp “probe” sequence containing the known junction sequence of the insert. …”
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    Efficient In Silico Identification of a Common Insertion in the MAK Gene which Causes Retinitis Pigmentosa
  17. 1817
    “…Availability and implementation: JBASE is implemented in C++, supported on Linux and is available at http://www.cs.toronto.edu/∼goldenberg/JBASE/jbase.tar.gz. …”
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    JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis
  18. 1818
    “…Availability and implementation: The C++ and QT source codes, the GUI applications for Windows, OS X and Linux operating systems and user manual are freely available for download under the GNU GPL v3 license at http://www.cmpe.boun.edu.tr/content/CnG. …”
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    CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data
  19. 1819
    “…Perceiving the feedbacks from the users and its utility in fish cytogenetic studies, the Fish Karyome database was upgraded by applying Linux, Apache, MySQL and PHP (pre hypertext processor) (LAMP) technologies. …”
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    Fish Karyome version 2.1: a chromosome database of fishes and other aquatic organisms
  20. 1820
    “…Compared to other tools, MG-Digger combined stand-alone use on Linux or Windows operating systems through a user-friendly interface, implementation of ready-to-use customized metagenome databases and query sequence databases, adjustable parameters for BLAST searches, and creation of output files containing selected reads with best match identification. …”
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    MG-Digger: An Automated Pipeline to Search for Giant Virus-Related Sequences in Metagenomes
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