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301por Sanderson, Nicholas D, Street, Teresa L, Foster, Dona, Swann, Jeremy, Atkins, Bridget L, Brent, Andrew J, McNally, Martin A, Oakley, Sarah, Taylor, Adrian, Peto, Tim E A, Crook, Derrick W, Eyre, David W“…CONCLUSIONS: We demonstrate a novel, scalable pipeline for real-time analysis of MinION sequence data and use of this pipeline to show initial proof of concept that metagenomic MinION sequencing can provide rapid, accurate diagnosis for prosthetic joint infections. …”
Publicado 2018
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302“…The transcriptionally active macronucleus of a ruminal ciliate, Entodinium caudatum MZG-1, was sequenced using the Illumina MiSeq and Oxford Nanopore MinION platforms. This is the first draft macronuclear genome sequence of a ruminal protozoon, and the genomic information will provide useful insight into the metabolism, physiology, and ecology of ruminal ciliates.…”
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303por White, Richard C., Torralba, Manolito, Colt, Kelly, Harrison, Frank, Goglin, Karrie, Nguyen, Kevin, D’Souza, Roshan, Bristow, Claire C., Ellis, Olivia, Soge, Olusegun O., Klausner, Jeffrey D., Fouts, Derrick E.“…Here, we used a hybrid approach combining Oxford Nanopore Technologies MinION and Illumina MiSeq sequencing data to obtain closed genome sequences of nine clinical N. gonorrhoeae isolates.…”
Publicado 2019
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304“…We discovered an emm28 Streptococcus pyogenes isolate causing necrotizing fasciitis in a patient exposed to the floodwaters of Hurricane Harvey in the Houston, TX, metropolitan area in August 2017. The Oxford Nanopore MinION instrument provided sufficient genome sequence data within 1 h of beginning sequencing to close the genome.…”
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305por You, Yuanhai, Kou, Yongjun, Niu, Longfei, Jia, Qiong, Liu, Yahui, Davies, Mark R., Walker, Mark J., Zhu, Jiaqiang, Zhang, Jianzhong“…Genome sequencing was achieved by a combination of Oxford Nanopore MinION and Illumina methodologies.…”
Publicado 2018
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306por Wawina-Bokalanga, Tony, Vanmechelen, Bert, Martí-Carreras, Joan, Vergote, Valentijn, Vermeire, Kurt, Muyembe-Tamfum, Jean-Jacques, Ahuka-Mundeke, Steve, Maes, Piet“…Here, we report the complete genome sequence of an Ebola virus strain obtained during the 2017 Likati outbreak in the Democratic Republic of the Congo (DRC) by using the Oxford Nanopore Technologies (ONT) MinION sequencer.…”
Publicado 2019
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307por Abdel-Hamid, Ahmed M., D’Alessandro-Gabazza, Corina N., Yasuma, Taro, Walden, Kimberly K. O., Fields, Christopher J., Gabazza, Esteban C., Cann, Isaac“…The genomes were obtained from a combination of Illumina MiSeq and Oxford Nanopore MinION sequencing.…”
Publicado 2022
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308por Faurdal, David, Jørgensen, Tue S., Alvarez-Arevalo, Maria, Mourched, Anna-Sophie, Sterndorff, Eva B., Charusanti, Pep, Weber, Tilmann“…The genomes were sequenced using the Oxford Nanopore Technologies MinION and Illumina NovaSeq systems. Both genomes are circular, with sizes of 5,661,342 bp and 5,869,086 bp, respectively.…”
Publicado 2023
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309por Yoshida, Masa-aki, Uomi, Masahide, Ikai, Tomone, Ilado, Tophil, Waturangi, Diana, Ekaputri, Januarti J., Setiamarga, Davin H. E.“…In order to gain insights into its genomic structure and understand its biology, we used the Oxford Nanopore MinION platform followed by PCR to verify the ends and determine its full circular genome sequence.…”
Publicado 2021
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310por Borlee, Grace I., Lakin, Steven M., Kapuscinski, Marylee L., Abdo, Zaid, Stenglein, Mark D., McCue, Patrick M., Borlee, Bradley R.“…Using Illumina short-read sequencing in conjunction with MinION sequencing, we report the genomes of eight isolates.…”
Publicado 2021
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311“…Here, we report draft genome sequences for eight Streptomyces strains that were isolated from multiple sky islands in Arizona and sequenced using an Oxford Nanopore Technologies Flongle adapter and MinION system.…”
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312“…The genome sequence of the soilborne bacterium Achromobacter strain ES-001, assembled from Illumina NextSeq and Nanopore MinION reads, is rich in genes predicted to encode iron, arsenic, and hydrocarbon metabolism, as well as type 6 secretion components. …”
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313“…Our results identified that MinION sequencing allowed for rapid, unbiased pathogen detection at the species and strain level for clinical cases. …”
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314por Hodorová, Viktória, Lichancová, Hana, Zubenko, Stanislav, Sienkiewicz, Karolina, Penir, Sarah Mae U., Afanasyev, Philipp, Boceck, Dominic, Bonnin, Sarah, Hakobyan, Siras, Smyczynska, Urszula, Zhivkoplias, Erik, Zlatohurska, Maryna, Tralle, Eugeniusz, Frolova, Alina, Pryszcz, Leszek P., Brejová, Broňa, Vinař, Tomáš, Nosek, Jozef“…Chromosome-scale genome assembly of the yeast Saprochaete ingens CBS 517.90 was determined by a combination of technologies producing short (HiSeq X; Illumina) and long (MinION; Oxford Nanopore Technologies) reads. The 21.2-Mbp genome sequence has a GC content of 36.9% and codes for 6,475 predicted proteins.…”
Publicado 2019
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315por Aoki, Masataka, Oshiki, Mamoru, Iwagaki, Mizuki, Hatamoto, Masashi, Yamaguchi, Takashi, Araki, Nobuo“…A 5.5-Mb genome sequence comprising four contigs was successfully obtained using Illumina NovaSeq and MinION sequencers. This draft genome sequence will contribute to the genomic knowledge of the bacterial order Cytophagales.…”
Publicado 2021
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316por Stone, Nathan E., Nunnally, Amalee E., Roe, Chandler C., Hornstra, Heidie M., Wagner, David M., Sahl, Jason W.“…A single-chromosome closed genome of Peptacetobacter (Clostridium) hiranonis strain DGF055142 was generated using Illumina MiSeq short reads paired with Oxford Nanopore MinION long reads. This isolate was obtained from a canine in Flagstaff, Arizona, in 2019. …”
Publicado 2021
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317“…We report the genome sequence of Frankia sp. strain ArI3, recovered as a single contig from one run of the Oxford Nanopore Technologies (ONT) MinION instrument. The genome has a G+C content of 72%, is 7,541,222 bp long, and contains 5,427 predicted protein-coding genes.…”
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318por Boldogkői, Zsolt, Szűcs, Attila, Balázs, Zsolt, Sharon, Donald, Snyder, Michael, Tombácz, Dóra“…Here, we provide a long-read sequencing dataset, which was generated by using the RSII and Sequel systems from Pacific Biosciences (PacBio), as well as MinION sequencing system from Oxford Nanopore Technologies (ONT). …”
Publicado 2018
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319Molecular Characterization of Newcastle Disease Viruses Isolated from Chickens in Tanzania and Ghanapor da Silva, Ana P., Aston, Emily J., Chiwanga, Gaspar H., Birakos, Ashley, Muhairwa, Amandus P., Kayang, Boniface B., Kelly, Terra, Zhou, Huaijun, Gallardo, Rodrigo A.“…Using the MinION, we successfully sequenced the NDV F gene hypervariable region of 24 isolates from Tanzania and four samples from Ghana. …”
Publicado 2020
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320por Romero-Calle, Danitza Xiomara, Pedrosa-Silva, Francisnei, Tomé, Luiz Marcelo Ribeiro, Sousa, Thiago J., de Oliveira Santos, Leila Thaise Santana, de Carvalho Azevedo, Vasco Ariston, Brenig, Bertram, Benevides, Raquel Guimarães, Venancio, Thiago M., Billington, Craig, Góes-Neto, Aristóteles“…Illumina HiSeq and Oxford Nanopore Technologies MinION sequencing were used for de novo hybrid assembly of the Salmonella SE3 genome. …”
Publicado 2022
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