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321por Butt, Salman L., Taylor, Tonya L., Volkening, Jeremy D., Dimitrov, Kiril M., Williams-Coplin, Dawn, Lahmers, Kevin K., Miller, Patti J., Rana, Asif M., Suarez, David L., Afonso, Claudio L., Stanton, James B.“…Six of the clinical samples contained two mixed genotypes as determined by MiSeq, of which the MinION method detected both genotypes in four samples. …”
Publicado 2018
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322“…We investigated a portable nanopore long-read sequencing device (MinION, Oxford Nanopore Technologies) for transcriptome profiling of tumors. …”
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323“…In a comparison of platform-dependent bias, the sequence read from short-read platforms (MiSeq, IonTorrent, and MGIseq-2000) showed lower bias than that of long-read platforms (Sequel II and MinION). Meanwhile, the sequences read from Sequel II and MinION platforms were relatively biased in some mock communities. …”
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324“…Sequences were obtained using a hybrid approach combining Oxford Nanopore Technologies MinION and Illumina NextSeq 500 sequence data.…”
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325por Burgess, Stewart T. G., Bartley, Kathryn, Nunn, Francesca, Wright, Harry W., Hughes, Margaret, Gemmell, Matthew, Haldenby, Sam, Paterson, Steve, Rombauts, Stephane, Tomley, Fiona M., Blake, Damer P., Pritchard, James, Schicht, Sabine, Strube, Christina, Øines, Øivind, Van Leeuwen, Thomas, Van de Peer, Yves, Nisbet, Alasdair J.“…Here, we report the first draft genome assembly and gene prediction of Dermanyssus gallinae, based on combined PacBio and MinION long-read de novo sequencing. The ∼959-Mb genome is predicted to encode 14,608 protein-coding genes.…”
Publicado 2018
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326por Gogoleva, Natalia E., Nikolaichik, Yevgeny A., Ismailov, Timur T., Khlopko, Yuri A., Dmitrieva, Svetlana A., Konnova, Tatiana A., Ermekkaliev, Taras S., Safronova, Vera I., Belimov, Andrey A., Gogolev, Yuri V.“…The sequence was obtained using an approach combining Oxford Nanopore Technologies MinION and Illumina MiSeq sequence data.…”
Publicado 2019
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327por Sarfraz, Sohaib, Oulghazi, Saïd, Cigna, Jérémy, Sahi, Shahbaz Talib, Riaz, Kashif, Tufail, Muhammad Rizwan, Fayyaz, Amna, Naveed, Khalid, Hameed, Akhtar, Lopez-Roques, Céline, Vandecasteele, Céline, Faure, Denis“…Therefore, by the combination of long (Oxford Nanopore Technologies, MinION) and short (Illumina MiSeq) reads, we sequenced the complete genome of P. punjabense SS95(T), which contains a circular chromosome of 4.793 Mb with a GC content of 50.7%.…”
Publicado 2020
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328por Richard, Damien, Rieux, Adrien, Lefeuvre, Pierre, Hamza, Azali, Lobin, Kanta Kumar, Naiken, Mark, Stravens, Randy, Boyer, Claudine, Boyer, Karine, Javegny, Stéphanie, Pruvost, Olivier“…High-quality Illumina assemblies were produced from 284 Xanthomonas citri pv. citri pathotype A strains mostly originating from the Southwest Indian Ocean region, a subset of which was also sequenced using MinION technology. Some strains hosted chromosomally encoded transcription activator-like effector (TALE) genes, an atypical feature for this bacterium.…”
Publicado 2021
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329por Plymale, Ruth, Hopkins, Griffin, Johnson, Taylor, Savage, Taylor, Schaal, Danielle“…These genomes were assembled using a hybrid approach combining paired-end Illumina reads with Oxford Nanopore Technologies MinION reads.…”
Publicado 2022
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330por Yanta, Christine A., Pollo, Stephen M. J., Barta, John R., Reiling, Sarah J., Wasmuth, James D., Dixon, Brent R., Guy, Rebecca A.“…Here, we report the first hybrid assembly for C. cayetanensis, which uses both Illumina MiSeq and Oxford Nanopore Technologies MinION platforms to generate genomic sequence data. …”
Publicado 2022
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331por Ogiso-Tanaka, Eri, Itagaki, Hiyori, Ohmae, Muneyuki, Hosoya, Tsuyoshi, Hosaka, Kentaro“…Oxford Nanopore Technologies MinION and Illumina sequence reads were assembled using NECAT and polished using Pilon to yield a 36.51-Mb genome with 10,625 predicted protein-coding genes.…”
Publicado 2022
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332por Sterndorff, Eva B., Jørgensen, Tue S., Garzón, Jaime Felipe Guerrero, Schmid, Julian, Grond, Stephanie, Weber, Tilmann“…The genome was sequenced with Oxford Nanopore Technologies MinION and Illumina MiSeq systems and consists of a single 9,635,564-nucleotide linear chromosome.…”
Publicado 2022
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333por Sazanova, Anna, Belimov, Andrey, Gogolev, Yuri, Chirak, Elizaveta, Afonin, Alexey, Karlov, Denis, Kuznetsova, Irina, Guro, Polina, Tikhomirova, Nina, Safronova, Vera“…The sequence was obtained using Oxford Nanopore Technologies MinION.…”
Publicado 2023
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334por Summers, Stephen, Freckelton, Marnie L., Nedved, Brian T., Rice, Scott A., Hadfield, Michael G.“…The genome was assembled using long reads from a Nanopore MinION sequencer for scaffolding and complemented with short-read MiSeq sequences. …”
Publicado 2018
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335por Summers, Stephen, Freckelton, Marnie L., Nedved, Brian T., Rice, Scott A., Hadfield, Michael G.“…A bacterial isolate of Thalassotalea euphylliae H2 was collected from the coral Montipora capitata. MinION long reads were employed for scaffolding and complemented with short-read MiSeq sequences to permit complete genome assembly. …”
Publicado 2019
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336por Hamidian, Mohammad, Wick, Ryan R., Judd, Louise M., Holt, Kathryn E., Hall, Ruth M.“…We present the complete 4.332-Mbp genome sequence (chromosome plus 1 plasmid), generated by combining long (MinION) and short (Illumina HiSeq) read sequencing data.…”
Publicado 2019
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337“…Here, we report complete genome sequences for these two closely related strains, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced on an Oxford Nanopore MinION flow cell.…”
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338“…These genome sequences were generated by combining short-read Illumina and long-read Oxford Nanopore MinION sequencing data using the Unicycler hybrid assembly pipeline.…”
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339por Ben Khedher, Mariem, Nindo, Fredrik, Chevalier, Alicia, Bonacorsi, Stéphane, Dubourg, Gregory, Fenollar, Florence, Casagrande, Florence, Lotte, Romain, Boyer, Laurent, Gallet, Armel, Rolain, Jean-Marc, Croce, Olivier, Ruimy, Raymond“…These complete genome sequences were obtained from a combination of Illumina HiSeq X Ten short reads and Oxford Nanopore MinION long reads.…”
Publicado 2021
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340“…Here, we report a complete genome sequence for Luteibacter anthropi strain SM7.4, assembled by combining the Oxford Nanopore MinION flow cell and paired-end Illumina sequencing approaches.…”
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