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401por Alagöz, Gökberk, Molz, Barbara, Eising, Else, Schijven, Dick, Francks, Clyde, Stein, Jason L., Fisher, Simon E.“…We also detect heritability depletion in genomic regions with Neanderthal ancestry for connectivity of the uncinate fasciculus; this is a white-matter tract involved in memory, language, and socioemotional processing with relevance to neuropsychiatric disorders. …”
Publicado 2022
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402“…Here, we demonstrate an excess of polymorphisms in present-day humans that predate the modern human-Neanderthal split (ancient polymorphisms), which cannot be explained solely by selectively neutral scenarios. …”
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403por Aquino, Yann, Bisiaux, Aurélie, Li, Zhi, O’Neill, Mary, Mendoza-Revilla, Javier, Merkling, Sarah Hélène, Kerner, Gaspard, Hasan, Milena, Libri, Valentina, Bondet, Vincent, Smith, Nikaïa, de Cevins, Camille, Ménager, Mickaël, Luca, Francesca, Pique-Regi, Roger, Barba-Spaeth, Giovanna, Pietropaoli, Stefano, Schwartz, Olivier, Leroux-Roels, Geert, Lee, Cheuk-Kwong, Leung, Kathy, Wu, Joseph T., Peiris, Malik, Bruzzone, Roberto, Abel, Laurent, Casanova, Jean-Laurent, Valkenburg, Sophie A., Duffy, Darragh, Patin, Etienne, Rotival, Maxime, Quintana-Murci, Lluis“…Furthermore, we show that natural selection has increased population differences in immune responses, particularly for variants associated with SARS-CoV-2 response in East Asians, and document the cellular and molecular mechanisms by which Neanderthal introgression has altered immune functions, such as the response of myeloid cells to viruses. …”
Publicado 2023
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404por Contreras-Galindo, Rafael, Kaplan, Mark H., He, Shirley, Contreras-Galindo, Angie C., Gonzalez-Hernandez, Marta J., Kappes, Ferdinand, Dube, Derek, Chan, Susana M., Robinson, Dan, Meng, Fan, Dai, Manhong, Gitlin, Scott D., Chinnaiyan, Arul M., Omenn, Gilbert S., Markovitz, David M.“…Remarkably, K111 proviruses appear in the genomes of the extinct Neanderthal and Denisovan, while modern humans have at least 100 K111 proviruses spread across the centromeres of 15 chromosomes. …”
Publicado 2013
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405por Wong, Lai-Ping, Lai, Jason Kuan-Han, Saw, Woei-Yuh, Ong, Rick Twee-Hee, Cheng, Anthony Youzhi, Pillai, Nisha Esakimuthu, Liu, Xuanyao, Xu, Wenting, Chen, Peng, Foo, Jia-Nee, Tan, Linda Wei-Lin, Koo, Seok-Hwee, Soong, Richie, Wenk, Markus Rene, Lim, Wei-Yen, Khor, Chiea-Chuen, Little, Peter, Chia, Kee-Seng, Teo, Yik-Ying“…An analysis of the relative relatedness between SSIP with two archaic hominins (Denisovan, Neanderthal) identified higher ancient admixture in East Asian populations than in SSIP. …”
Publicado 2014
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406“…In Central African chimpanzee, OAS1 has evolved under long-term balancing selection, resulting in the persistence of polymorphisms since the origin of hominoids, whereas human populations have acquired and retained OAS1 alleles from Neanderthal and Denisovan origin. We decided to further investigate the evolution of OAS1 in primates by characterizing intra-specific variation in four species commonly used as models in infectious disease research: the rhesus macaque, the cynomolgus macaque, the olive baboon, and the Guinea baboon. …”
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407“…Our pipeline combines popular sequence datasets and tree building algorithms with custom data parsing to generate accurate alignments and phylogenies using all the individuals from the 1000 Genomes Project, Neanderthal and Denisovan genomes, as well as reference genomes of Chimpanzee and Rhesus Macaque. …”
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408por Gardner, Eugene J., Lam, Vincent K., Harris, Daniel N., Chuang, Nelson T., Scott, Emma C., Pittard, W. Stephen, Mills, Ryan E., Devine, Scott E.“…In addition to using MELT to discover MEIs in modern humans as part of the 1000 Genomes Project, we also used it to discover MEIs in chimpanzees and ancient (Neanderthal and Denisovan) hominids. We detected diverse patterns of MEI stratification across these populations that likely were caused by (1) diverse rates of MEI production from source elements, (2) diverse patterns of MEI inheritance, and (3) the introgression of ancient MEIs into modern human genomes. …”
Publicado 2017
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409“…The object comes from layer IV, the same layer in which a Neanderthal child burial was unearthed, which contains a para-Micoquian industry of Kiik-Koba type dated to between c.35 and 37 cal kyr BP. …”
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410“…Though many European Upper Palaeolithic sites document early examples of symbolic material expressions (e.g., cave art, personal ornaments, figurines), there exist few reports on the use of earth pigments outside of cave art–and occasionally Neanderthal–contexts. Here, we present the first in-depth study of the diachronic changes in ochre use throughout an entire Upper Palaeolithic sequence at Hohle Fels cave, Germany, spanning from ca. 44,000–14,500 cal. yr. …”
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411por Örd, Tiit, Puurand, Tarmo, Örd, Daima, Annilo, Tarmo, Möls, Märt, Remm, Maido, Örd, Tõnis“…The repeat is however evident in Neanderthal and Denisovan genomes. Reporter plasmid experiments in human cell culture reveal that an increased copy number of the TRIB3 promoter 33-bp repeat results in increased transcriptional activity. …”
Publicado 2020
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412“…The application of MatchSeq to Neanderthal DNA, a particularly complex source of degraded DNA, reveals that 1- or 2-nt overhangs and blunt ends dominate the ends of ancient DNA molecules and that short gaps exist, which are predominantly caused by the loss of individual purines. …”
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413por Vallini, Leonardo, Marciani, Giulia, Aneli, Serena, Bortolini, Eugenio, Benazzi, Stefano, Pievani, Telmo, Pagani, Luca“…In this light, we suggest a parsimonious placement of Oase1 as an individual related to Bacho Kiro who experienced additional Neanderthal introgression. Another expansion, started before 38 ka, is broadly associated with Upper Paleolithic industries and repopulated Europe with sporadic admixtures with the previous wave (GoyetQ116-1) and more systematic ones, whereas moving through Siberia (Yana, Mal’ta). …”
Publicado 2022
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414por Linscott, Bethan, Pike, Alistair W. G., Angelucci, Diego E., Cooper, Matthew J., Milton, James S., Matias, Henrique, Zilhão, João“…Here, using an optimized methodology, we present highly spatially resolved (87)Sr/(86)Sr measurements made by laser ablation multicollector inductively coupled plasma mass spectrometry along the growth axis of the enamel of two marine isotope stage 5b, Middle Paleolithic Neanderthal teeth (Gruta da Oliveira), a Tardiglacial, Late Magdalenian human tooth (Galeria da Cisterna), and associated contemporaneous fauna from the Almonda karst system, Torres Novas, Portugal. …”
Publicado 2023
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415“…We apply these methods to previously published datasets from hybrid populations of swordtail fish (Xiphophorus) and baboons (Papio), and to inferred Neanderthal introgression in modern humans. Across systems, we find that upwards of 20% of the variation in local ancestry at the broadest genomic scales can be attributed to systematic selection against introgressed alleles, consistent with strong selection acting on early-generation hybrids. …”
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416por Hu, Hai Yang, Guo, Song, Xi, Jiang, Yan, Zheng, Fu, Ning, Zhang, Xiaoyu, Menzel, Corinna, Liang, Hongyu, Yang, Hongyi, Zhao, Min, Zeng, Rong, Chen, Wei, Pääbo, Svante, Khaitovich, Philipp“…This suggests that miR-34c-5p expression change took place after the split of the human and the Neanderthal lineages and had adaptive significance. …”
Publicado 2011
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417por Xing, Song, Martinón-Torres, María, Bermúdez de Castro, José María, Zhang, Yingqi, Fan, Xiaoxiao, Zheng, Longting, Huang, Wanbo, Liu, Wu“…In addition, no typical Neanderthal features have been identified in the Hexian sample. …”
Publicado 2014
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418por Kari, Lila, Hill, Kathleen A., Sayem, Abu S., Karamichalis, Rallis, Bryans, Nathaniel, Davis, Katelyn, Dattani, Nikesh S.“…This method also correctly finds the mtDNA sequences most closely related to that of the anatomically modern human (the Neanderthal, the Denisovan, and the chimp), and that the sequence most different from it in this dataset belongs to a cucumber.…”
Publicado 2015
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419“…Very recent human positive selection was identified in the filaggrin2 L41 site that was present in Neanderthal. Together, our results identifying recent positive selection in distinct EDC genes reveal an underappreciated evolution of epidermal skin barrier function in primates and humans.…”
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420“…This divergent health status may have one or more causes: direct effects of red hair pigments (pheomelanins) or their by-products; effects of other genes that show linkage with genes involved in pheomelanin production; excessive prenatal exposure to estrogen (which facilitates expression of red hair during fetal development and which, at high levels, may cause health problems later in life); evolutionary recentness of red hair and corresponding lack of time to correct negative side effects; or genetic incompatibilities associated with the allele Val92Met, which seems to be of Neanderthal origin and is one of the alleles that can cause red hair.…”
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