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481por Adamusiak, Tomasz, Burdett, Tony, Kurbatova, Natalja, Joeri van der Velde, K, Abeygunawardena, Niran, Antonakaki, Despoina, Kapushesky, Misha, Parkinson, Helen, Swertz, Morris A“…RESULTS: OntoCAT provides a seamless programming interface to query heterogeneous ontology resources including OLS and BioPortal, as well as user-specified local OWL and OBO files. Each resource is wrapped behind easy to learn Java, Bioconductor/R and REST web service commands enabling reuse and integration of ontology software efforts despite variation in technologies. …”
Publicado 2011
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482por Hill, David P, Adams, Nico, Bada, Mike, Batchelor, Colin, Berardini, Tanya Z, Dietze, Heiko, Drabkin, Harold J, Ennis, Marcus, Foulger, Rebecca E, Harris, Midori A, Hastings, Janna, Kale, Namrata S, de Matos, Paula, Mungall, Christopher J, Owen, Gareth, Roncaglia, Paola, Steinbeck, Christoph, Turner, Steve, Lomax, Jane“…These logical definitions are available as an extended version of the ontology from http://purl.obolibrary.org/obo/go/extensions/go-plus.owl.…”
Publicado 2013
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483“…RESULTS: The EPO follows the OBO Foundry guidelines and uses the Basic Formal Ontology (BFO) as an upper ontology. …”
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484por Tatum, Zuotian, Roos, Marco, Gibson, Andrew P, Taschner, Peter EM, Thompson, Mark, Schultes, Erik A, Laros, Jeroen FJ“…RESULTS: As part of our effort to create linked data for interoperable sequence annotations, we present an RDF data model for sequence annotation using the ontological framework established by the OBO Foundry ontologies and the Basic Formal Ontology (BFO). …”
Publicado 2014
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485por He, Yongqun, Duncan, William D., Cooper, Daniel J., Hansen, Jens, Iyengar, Ravi, Ong, Edison, Walker, Kendal, Tibi, Omar, Smith, Sam, Serra, Lucas M., Zheng, Jie, Sarntivijai, Sirarat, Schürer, Stephan, O’Shea, K. Sue, Diehl, Alexander D.“…The Cell Ontology (CL) and Cell Line Ontology (CLO) are two community-based OBO Foundry ontologies in the domains of in vivo cells and in vitro cell line cells, respectively. …”
Publicado 2019
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486“…RESULTS: We have developed the Cancer Cell Ontology according to OBO Foundry principles as an extension of the Cell Ontology. …”
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487por Tsaramirsis, Kostandinos, Tsaramirsis, Georgios, Khan, Fazal Qudus, Ahmad, Awais, Khadidos, Alaa Omar, Khadidos, Adil“…Additionally, this approach understands any direct acyclic digraph in an Open Biomedical Ontologies (OBO)-like format and its annotations. On the other hand, software developers of similar applications can also benefit by using this as a template for their applications.…”
Publicado 2019
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488por Topalis, Pantelis, Mitraka, Elvira, Bujila, Ioana, Deligianni, Elena, Dialynas, Emmanuel, Siden-Kiamos, Inga, Troye-Blomberg, Marita, Louis, Christos“…IDOMAL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium. RESULTS: The first version of the malaria ontology covers both clinical and epidemiological aspects of the disease, as well as disease and vector biology. …”
Publicado 2010
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489por Meehan, Terrence F, Masci, Anna Maria, Abdulla, Amina, Cowell, Lindsay G, Blake, Judith A, Mungall, Christopher J, Diehl, Alexander D“…CONCLUSION: Use of computable definitions enhances the development of the CL and supports the interoperability of OBO ontologies.…”
Publicado 2011
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490The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013por Hastings, Janna, de Matos, Paula, Dekker, Adriano, Ennis, Marcus, Harsha, Bhavana, Kale, Namrata, Muthukrishnan, Venkatesh, Owen, Gareth, Turner, Steve, Williams, Mark, Steinbeck, Christoph“…We have completely aligned the ontology with the Open Biomedical Ontologies (OBO) Foundry-recommended upper level Basic Formal Ontology. …”
Publicado 2013
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491“…The system incorporates a broad array of approaches proposed to benefit tagging, including the use of Unified Medical Language System (UMLS)- and Open Biomedical Ontologies (OBO)-based lexical resources, word representations induced from unlabeled text, statistical truecasing and non-local features. …”
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492por Groza, Tudor, Köhler, Sebastian, Doelken, Sandra, Collier, Nigel, Oellrich, Anika, Smedley, Damian, Couto, Francisco M, Baynam, Gareth, Zankl, Andreas, Robinson, Peter N.“…Finally, three established phenotype concept recognizers (NCBO Annotator, OBO Annotator and Bio-LarK CR) were comprehensively evaluated, and results are reported against both the text corpus and the test suites. …”
Publicado 2015
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493por Vita, Randi, Overton, James A., Seymour, Emily, Sidney, John, Kaufman, Jim, Tallmadge, Rebecca L., Ellis, Shirley, Hammond, John, Butcher, Geoff W., Sette, Alessandro, Peters, Bjoern“…Where available, this work is based on existing ontologies from the OBO foundry. CONCLUSIONS: Overall, representing MHC molecules provides a challenging and practically important test case for ontology building, and could serve as an example of how to integrate other ontology building efforts into web resources. …”
Publicado 2016
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494por Natale, Darren A., Arighi, Cecilia N., Blake, Judith A., Bona, Jonathan, Chen, Chuming, Chen, Sheng-Chih, Christie, Karen R., Cowart, Julie, D'Eustachio, Peter, Diehl, Alexander D., Drabkin, Harold J., Duncan, William D., Huang, Hongzhan, Ren, Jia, Ross, Karen, Ruttenberg, Alan, Shamovsky, Veronica, Smith, Barry, Wang, Qinghua, Zhang, Jian, El-Sayed, Abdelrahman, Wu, Cathy H.“…The Protein Ontology (PRO; http://purl.obolibrary.org/obo/pr) formally defines and describes taxon-specific and taxon-neutral protein-related entities in three major areas: proteins related by evolution; proteins produced from a given gene; and protein-containing complexes. …”
Publicado 2017
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495por Melo, Martim, Freitas, Bárbara, Verbelen, Philippe, da Costa, Sátiro R., Pereira, Hugo, Fuchs, Jérôme, Sangster, George, Correia, Marco N., de Lima, Ricardo F., Crottini, Angelica“…The new species occurs at low elevations of the old-growth native forest of Príncipe, currently restricted to the south of the island but fully included within Príncipe Obô Natural Park. Otusbikegilasp. nov. takes the number of single-island endemic bird species of Príncipe to eight, further highlighting the unusually high level of bird endemism for an island of only 139 km(2).…”
Publicado 2022
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496por Van der Guchte, M, Herzberger, L O, Bos, Kors, Vermeulen, L, Wiggers, L, Buzuloiu, V, Nelu, M, Ruscu, R, Koch, J, Maroti, T, Molnár, S, Tóth, J, Böck, R K, Gheorghe, A, Krischer, Werner, McLaren, R A, Pfennig, J, Hajduk, Z, Kajetanowicz, M, Malecki, P, Natkaniec, Z, Sobola, A, Green, B J, Medcalf, T, Strong, J, Wildish, AEnlace del recurso
Publicado 1990
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498por Braun, Maya, Carlier, Stéphanie, De Backere, Femke, De Paepe, Annick, Van De Velde, Marie, Van Dyck, Delfien, Marques, Marta M., De Turck, Filip, Crombez, Geert“…For the assessment of quality, we used 12 criteria informed by the Open Biological and Biomedical Ontology (OBO) Foundry principles of good ontology practice. …”
Publicado 2023
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499por Du, Pan, Feng, Gang, Flatow, Jared, Song, Jie, Holko, Michelle, Kibbe, Warren A., Lin, Simon M.“…We propose statistical methods to adapt the general purpose, OBO Foundry Disease Ontology (DO) for the identification of gene-disease associations. …”
Publicado 2009
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500por Mayer, Gerhard, Montecchi-Palazzi, Luisa, Ovelleiro, David, Jones, Andrew R., Binz, Pierre-Alain, Deutsch, Eric W., Chambers, Matthew, Kallhardt, Marius, Levander, Fredrik, Shofstahl, James, Orchard, Sandra, Antonio Vizcaíno, Juan, Hermjakob, Henning, Stephan, Christian, Meyer, Helmut E., Eisenacher, Martin“…Database URL: http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo…”
Publicado 2013
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