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181“…The OBO Foundry is a collaborative effort to establish a set of principles for ontology development with the eventual goal of creating a set of interoperable reference ontologies in the domain of biomedicine. …”
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182“…The latter are the bearer of dispositions, which can then be realized by their manifestations — pathologic processes. Despite its ontological soundness, implementing this model via purpose-oriented domain ontologies will likely require considerable effort, both in ontology construction and maintenance, which constitutes a considerable problem for SNOMED CT, presently the largest biomedical ontology. …”
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183“…Research topics of OBML 2010 included medical informatics, Semantic Web applications, formal ontology, bio-ontologies, knowledge representation as well as the wide range of applications of biomedical ontologies to science and medicine. …”
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184“…BACKGROUND: In biomedical ontologies, mereological relations have always been subject to special interest due to their high relevance in structural descriptions of anatomical entities, cells, and biomolecules. …”
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185“…BACKGROUND: Biomedical ontologies have become an increasingly critical lens through which researchers analyze the genomic, clinical and bibliographic data that fuels scientific research. …”
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186“…The Gene Ontology (GO) initiative is a collaborative effort that uses controlled vocabularies for annotating genetic information. …”
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187“…This article provides an overview of the problem and outlines a solution approach utilizing ontological characterizations. Based on illustrative implementation examples, we also discuss the need for consensus criteria to be adopted by the research community, and considerations on future developments. …”
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188por Hastings, Janna, Magka, Despoina, Batchelor, Colin, Duan, Lian, Stevens, Robert, Ennis, Marcus, Steinbeck, Christoph“…One such ontology for the chemical domain is ChEBI. ChEBI provides a classification of chemicals based on their structural features and a role or activity-based classification. …”
Publicado 2012
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189por Hankey, Alex“…Instead of being poles apart, the ontologies of western science and Ayurveda seem to have become almost identical.…”
Publicado 2012
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190“…However, not all data fields derived from the cell banks' databases could be mapped to existing ontologies. As a result, we created a new ontology called cell culture ontology (CCONT) integrating existing ontologies where possible. …”
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191“…Standard microbial evolutionary ontology is organized according to a nested hierarchy of entities at various levels of biological organization. …”
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193por Harris, Midori A., Lock, Antonia, Bähler, Jürg, Oliver, Stephen G., Wood, Valerie“…Motivation: To provide consistent computable descriptions of phenotype data, PomBase is developing a formal ontology of phenotypes observed in fission yeast. Results: The fission yeast phenotype ontology (FYPO) is a modular ontology that uses several existing ontologies from the open biological and biomedical ontologies (OBO) collection as building blocks, including the phenotypic quality ontology PATO, the Gene Ontology and Chemical Entities of Biological Interest. …”
Publicado 2013
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194por Hancock, John M.Enlace del recurso
Publicado 2014
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195por Younesi, Erfan, Ansari, Sam, Guendel, Michaela, Ahmadi, Shiva, Coggins, Chris, Hoeng, Julia, Hofmann-Apitius, Martin, Peitsch, Manuel C“…Due to the growing number of such data, there is a need for domain-specific standard ontologies to facilitate the integration of tobacco exposure data. …”
Publicado 2014
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196“…In particular, we discuss how comprehensive ontologies of cell phenotypes and of changes in mechanisms can be designed using the entity-quality (EQ) model. …”
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197por Ciccarese, Paolo, Soiland-Reyes, Stian, Belhajjame, Khalid, Gray, Alasdair JG, Goble, Carole, Clark, Tim“…RESULTS: We present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing “just enough” descriptions essential for tracking the provenance, authoring and versioning of web resources. …”
Publicado 2013
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198“…In this paper, we raise a new gradient learning model for ontology similarity measuring and ontology mapping in multidividing setting. …”
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199por Lingutla, Nikhil Tej, Preece, Justin, Todorovic, Sinisa, Cooper, Laurel, Moore, Laura, Jaiswal, Pankaj“…RESULTS: We developed a novel image segmentation and annotation software application, “Annotation of Image Segments with Ontologies” (AISO). The tool enables researchers and curators to delineate portions of an image into multiple highlighted segments and annotate them with an ontology-based controlled vocabulary. …”
Publicado 2014
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200por Oellrich, Anika, Walls, Ramona L, Cannon, Ethalinda KS, Cannon, Steven B, Cooper, Laurel, Gardiner, Jack, Gkoutos, Georgios V, Harper, Lisa, He, Mingze, Hoehndorf, Robert, Jaiswal, Pankaj, Kalberer, Scott R, Lloyd, John P, Meinke, David, Menda, Naama, Moore, Laura, Nelson, Rex T, Pujar, Anuradha, Lawrence, Carolyn J, Huala, Eva“…Curated phenotypes were first converted into a common format using taxonomically broad ontologies such as the Plant Ontology, Gene Ontology, and Phenotype and Trait Ontology. …”
Publicado 2015
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