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20461Bioinformatics Analysis of a Prognostic miRNA Signature and Potential Key Genes in Pancreatic Cancerpor Chen, Shuoling, Gao, Chang, Yu, Tianyang, Qu, Yueyang, Xiao, Gary Guishan, Huang, Zunnan“…The functions of the common genes were subjected to Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses. A protein-protein interaction (PPI) network of the common genes was constructed with the STRING database and visualized with Cytoscape software. …”
Publicado 2021
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20462por Bu, Tianyi, Qiao, Zhengxue, Wang, Wenbo, Yang, Xiuxian, Zhou, Jiawei, Chen, Lu, Yang, Jiarun, Xu, Jia, Ji, Yanping, Wang, Yini, Zhang, Wenxin, Yang, Yanjie, Qiu, Xiaohui, Yu, Yunmiao“…To explain the competing endogenous RNA role of hsa_circ_0126218 in the pathogenesis of female MDD, a hsa_circ_0126218-miRNA-mRNA network was established. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses stated that some of the enriched pathways downstream of hsa_circ_0126218 are closely related to MDD. …”
Publicado 2021
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20463por Liu, Jingchao, Ma, Hong, Meng, Lingfeng, Liu, Xiaodong, Lv, Zhengtong, Zhang, Yaoguang, Wang, Jianye“…Next, functional enrichment analysis, including both Kyoto Encyclopedia of Genes and Genomes and Gene Ontology analyses, was performed to elucidate the mechanism underlying the signature. …”
Publicado 2021
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20464por Niu, Su-Ping, Zhang, Ya-Jun, Han, Na, Yin, Xiao-Feng, Zhang, Dian-Ying, Kou, Yu-Hui“…SCI-associated DEGs from rat samples were identified, and Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were performed. …”
Publicado 2020
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20465“…The target genes of miRNA-21 were predicted, and the Gene Ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway were analyzed. …”
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20466por Li, Tian-Hao, Qin, Cheng, Zhao, Bang-Bo, Cao, Hong-Tao, Yang, Xiao-Ying, Wang, Yuan-Yang, Li, Ze-Ru, Zhou, Xing-Tong, Wang, Wei-Bin“…Then, the logistic analysis was used to estimate the correlation between METTL18 and clinicopathological factors. Besides, Gene Ontology (GO), Gene Set Enrichment Analysis (GSEA), and single-sample Gene Set Enrichment Analysis (ssGSEA) were used to explore relevant functions and quantify the degree of immune infiltration for METTL18. …”
Publicado 2021
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20467por Li, Chang, Tian, Chen, Liu, Yangyang, Liang, Jinyan, Zeng, Yulan, Yang, Qifan, Liu, Yuting, Wu, Di, Wu, Jingjing, Wang, Juanjuan, Zhang, Kai, Gu, Feifei, Hu, Yue, Liu, Li“…Gene set enrichment analysis (GSEA) and Gene Ontology analysis indicated that the PI3K-AKT-mTOR, TGF-β, MYC-related pathways might be correlated with this phenomenon. …”
Publicado 2021
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20468por Niu, Kai, Li, Qifang, Liu, Yuan, Qiao, Yi, Li, Bingbing, Wei, Chao, Wang, Kunrui, Cui, Lu'an, Zheng, Canlei, Wang, Rong, Zhang, Li, Zhang, Honghua, Sun, Bing, Yu, Bin“…The Metascape database was used for the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses of the predicted targets of SCDP for UC. …”
Publicado 2021
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20469por Wu, Bolin, Yuan, Yanchi, Liu, Jiayin, Shang, Haitao, Dong, Jing, Liang, Xitian, Wang, Dongxu, Chen, Yichi, Wang, Chunyue, Zhou, Yang, Jing, Hui, Cheng, Wen“…By contrast, enrichment analysis estimated the functional roles of differentially expressed genes. The Gene Ontology terms “cadherin binding” and “cell adhesion molecule binding” and KEGG pathway “pathway in cancer” were significantly enriched by differentially expressed genes after combined SDT/FTS therapy. …”
Publicado 2021
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20470por Jameson, Tom S O, Pavis, George F, Dirks, Marlou L, Lee, Benjamin P, Abdelrahman, Doaa R, Murton, Andrew J, Porter, Craig, Alamdari, Nima, Mikus, Catherine R, Wall, Benjamin T, Stephens, Francis B“…MAIN OUTCOME MEASURES: Muscle function was assessed daily, and skeletal muscle biopsies were taken after 24, 27, and 36 hours for measurements of myoPS rates using deuterated water, and gene ontology and NF-κB signaling analysis using a quantitative reverse transcription PCR (RT-qPCR) gene array. …”
Publicado 2021
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20471por Chankeaw, Wiruntita, Lignier, Sandra, Richard, Christophe, Ntallaris, Theodoros, Raliou, Mariam, Guo, Yongzhi, Plassard, Damien, Bevilacqua, Claudia, Sandra, Olivier, Andersson, Göran, Humblot, Patrice, Charpigny, Gilles“…The most interesting result is that stromal cells express more genes than the two epithelial types and are associated with a greater number of pathways and ontology terms. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-07712-0.…”
Publicado 2021
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20472“…METHODS: TETs datasets were harvested from the UCSC Xena as the training cohort, followed by differentially expressed mRNAs (DEmRNAs), lncRNAs (DElncRNAs), and miRNAs (DEmiRNAs) at different pathologic type (A, AB, B, and TC) identified via DESeq2 package. clusterProfiler package was utilized to carry out gene ontology and Kyoto encyclopedia of genes and genomes functional analysis on the DEmRNAs. …”
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20473por Mi, Xiaozeng, Yue, Yi, Tang, Mengsha, An, Yanlin, Xie, Hui, Qiao, Dahe, Ma, Zhiyu, Liu, Shengrui, Wei, Chaoling“…TeaAS supports four methods of retrieval of AS information based on gene ID, gene name, annotation (non-redundant/Kyoto encyclopedia of genes and genomes/gene ontology annotation or chromosomal location) and RNA-seq data. …”
Publicado 2021
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20474por Dora, David, Rivard, Christopher, Yu, Hui, Pickard, Shivaun Lueke, Laszlo, Viktoria, Harko, Tunde, Megyesfalvi, Zsolt, Dinya, Elek, Gerdan, Csongor, Szegvari, Gabor, Hirsch, Fred R., Dome, Balazs, Lohinai, Zoltan“…We show the RNA gene enrichment of the most critical molecular pathways based on the Gene Ontology (GO) iteration system using thorough bioinformatics analysis to identify new molecular targets in distinct NE subtypes. …”
Publicado 2021
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20475por Zhao, Xue Fei, Liang, Li Qun, Liew, Hon Jung, Chang, Yu Mei, Sun, Bo, Wang, Shuang Yi, Mi, Bo Han, Zhang, Li Min“…Results derived from Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of the coding genes were correlated with the lncRNA expression profiles. …”
Publicado 2021
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20476“…Differentially expressed genes (DEGs) were screened using the GEO2R and Venn diagram tools. Then, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed. …”
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20477“…Differentially expressed genes between degenerative disc and non-degenerative disc were performed by R software. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genome (KEGG) pathway enrichment analyses were performed using The Database for Annotation, Visualization and Integrated Discovery (DAVID). …”
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20478“…Simulated adaptation of FDA-approved assays showed similar performance. Gene ontology analyses of identified regions showed an enrichment for regulatory miRNAs and protein kinase regulators. …”
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20479por Liu, Jing, Zuo, Ying, Qu, Gui-Mei, Song, Xiao, Liu, Zhong-Hui, Zhang, Ting-Guo, Zheng, Zhu-Hua, Wang, Hong-Kun“…Furthermore, microarray analysis was carried out to compare the global mRNA expression profile between the HEC-1-B and CypB-silenced HEC-1-B cells. Gene ontology and KEGG pathway enrichment analysis were performed to determine the potential function of differentially expressed genes related to CypB. …”
Publicado 2021
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20480“…Differentially expressed miRNAs were calculated by using R software. Besides, gene ontology and enriched pathway analysis of target mRNAs were analyzed by using FunRich. …”
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