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21501“…After determining differentially expressed genes (DEG), gene ontology (GO), pathway enrichment and protein–protein interaction (PPI) network analyses were performed to determine DEG functions. …”
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21502por Huang, Hui, Huo, Zhengyuan, Jiao, Jiantong, Ji, Wei, Huang, Jin, Bian, Zheng, Xu, Bin, Shao, Junfei, Sun, Jun“…Moreover, cell proliferation assays were performed. We performed Gene Ontology (GO) analysis and gene set enrichment analysis (GSEA) based on ChIP-seq and public datasets to explore the biological characteristics of HOXC6 in gliomas. …”
Publicado 2022
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21503por Dong, Chen, Liu, Wei, Zhang, Yu, Song, Yajuan, Du, Jing, Huang, Zhaosong, Wang, Tong, Yu, Zhou, Ma, Xianjie“…Common DEGs overlapped in both the 5 h and 24 h groups. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed to determine the functions of the DEGs. …”
Publicado 2022
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21504por Cui, Han, Duan, Ruirui, Niu, Hongtao, Yu, Tao, Huang, Ke, Chen, Chen, Hao, Ke, Yang, Ting, Wang, Chen“…The functions of the differentially expressed mRNAs were analyzed by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses. …”
Publicado 2022
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21505por Zhou, Zuyang, Li, Kunyu, Liu, Jiannan, Zhang, Hui, Fan, Yekai, Chen, Yulin, Han, Haiyin, Yang, Junqi, Liu, Yufang“…The host genes of differentially expressed (DE) circRNAs were predicted, and Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes analyses (KEGG) of host genes with DE circRNAs were performed to explore the functions of circRNAs. …”
Publicado 2022
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21506“…Functional annotation of the target genes with Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) suggested that these genes mainly contributed to biological pathways, endocytosis, apoptotic process, trans-Golgi membrane, and lysosome. …”
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21507por Rizwan, Hafiz Muhammad, Shaozhong, Fang, Li, Xiaoting, Bilal Arshad, Muhammad, Yousef, Ahmed Fathy, Chenglong, Yang, Shi, Meng, Jaber, Mohammed Y. M., Anwar, Muhammad, Hu, Shuai-Ya, Yang, Qiang, Sun, Kaiwei, Ahmed, Mohamed A. A., Min, Zheng, Oelmüller, Ralf, Zhimin, Lin, Chen, Faxing“…There were twenty putative ped-miRNAs which were also predicted that belong to nine families targeting thirteen PeKCS genes. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation results were highly associated with fatty acid synthase and elongase activity, lipid metabolism, stress responses, and plant-pathogen interaction. …”
Publicado 2022
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21508por Yan, Ruei-Liang, Luan, Chiu-Lin, Liao, Chun-Chieh, Liu, Li-Heng, Chen, Fei-Yun, Chen, Hsin-Yi, Chen, Ruey-Hwa“…Phosphatidylinositol 3-phosphate ELISA assay was used to quantify the enzymatic activity of VPS34 complex. qRT-PCR analysis was used to determine BCRP3 expression under stresses, whereas mass spectrometry and Gene Ontology analyses were employed to evaluate the effect of BCRP3 deficiency on proteome changes. …”
Publicado 2022
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21509por Olney, Kimberly C., Todd, Kennedi T., Pallegar, Praveen N., Jensen, Tanner D., Cadiz, Mika P., Gibson, Katelin A., Barnett, Joseph H., de Ávila, Camila, Bouchal, Samantha M., Rabichow, Benjamin E., Ding, Zonghui, Wojtas, Aleksandra M., Wilson, Melissa A., Fryer, John D.“…In addition, analysis of both the Allen Brain Atlas and GTEx datasets for differentially expressed genes between likely “high contamination” and “low contamination” groups revealed a clear enrichment of choroid plexus marker genes and gene ontology pathways characteristic of these ciliated choroid cells. …”
Publicado 2022
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21510“…A gene network was constructed, and genes were classified into different modules using WGCNA. Gene ontology (GO) was performed to further explore the potential function of the genes in the most related module. …”
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21511por Abril-Parreño, Laura, Meade, Kieran G., Krogenæs, Anette Kristine, Druart, Xavier, Cormican, Paul, Fair, Sean“…Using the low-fertility Suffolk breed as a reference level; 27, 1827 and 2641 genes were differentially expressed in Belclare, Fur and NWS ewes, respectively (P < 0.05 and FC > 1.5). Gene ontology (GO) analysis revealed that Fur and NWS had an up-regulation of enriched pathways involved in muscle contraction and development compared to Suffolk. …”
Publicado 2022
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21512por Wu, Yang, Shi, Huimin, Yu, Haifeng, Ma, Yu, Hu, Haibo, Han, Zhigang, Zhang, Yonghu, Zhen, Zilong, Yi, Liuxi, Hou, Jianhua“…A total of 18,922 differentially expressed genes were obtained. Gene ontology and Kyoto Encyclopedia of Genes and Genomes analysis showed up-regulated genes were mainly enriched in the branched-chain amino acid catabolic process, while the down-regulated genes were mainly enriched in the photosynthesis-related process. …”
Publicado 2022
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21513por Chen, Desheng, Yao, Jiawei, Hu, Bowen, Kuang, Liangwen, Xu, Binshun, Liu, Haiyu, Dou, Chao, Wang, Guangzhi, Guo, Mian“…The function of these genes was studied by Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. …”
Publicado 2022
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21514por Liu, Wenhu, Wang, Qiang, Chang, Jinxia, Bhetuwal, Anup, Bhattarai, Nisha, Zhang, Fan, Tang, Jiancai“…METHODS: In the current study, an optimized proteomics approach was employed to discover novel serum-based biomarkers for ESCC, and unveil abnormal signal pathways. Gene ontology (GO) enrichment analysis was done by Gene Set Enrichment Analysis (GSEA) and Metascape database, respectively. …”
Publicado 2022
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21515por Zhang, Lu, Cao, Hongxin, Gu, Guanghui, Hou, Dehui, You, Yunhao, Li, Xiang, Chen, Yunzhen, Jiao, Guangjun“…The predicted target genes were further analyzed by Gene Ontology and pathway enrichment analysis and a regulatory network of DEmiRNAs and their target genes was constructed. …”
Publicado 2022
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21516“…Through aggregate analyses such as gene ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis, a protein-protein interaction (PPI) network was constructed to analyze the potential function of DETh17RGs. …”
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21517por Liu, Zhou, Song, Ying-Nan, Chen, Kai-Yuan, Gao, Wei-Long, Chen, Hong-Jin, Liang, Gui-You“…The pathways with common DEGs were analyzed via Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and gene set enrichment analyses. …”
Publicado 2022
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21518“…In addition, we also analyzed the first five rich Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and the most abundant Gene Ontology (GO)-molecular functional terms. Furthermore, interleukin-7 receptor (IL-7R), tyrosine–protein kinase (LCK), histone deacetylase 1 (HDAC1), and epidermal growth factor receptor (EGFR) genes were identified as hub genes via protein–protein interaction (PPI) network analysis. …”
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21519por Li, Changjian, Zou, Xiaoming, Cai, Qingxin, Li, Jiacheng, Yang, Shifeng, Zhang, Ange, Chen, Chongyan, Zhu, Lei“…Modules were screened using the molecular complex detection (MCODE) plug-in. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were performed using the genes in the network. …”
Publicado 2022
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21520por You, Ruilian, Heyang, Zhige, Ma, Yixin, Xia, Peng, Zheng, Hua, Lin, Jianfeng, Ji, Peili, Chen, Limeng“…Differentially expressed genes (DEGs) were identified and enrichment pathways were conducted based on gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) database, and Gene set enrichment analysis (GSEA). …”
Publicado 2022
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