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  1. 22941
    “…Sample annotations are manually curated and use standard formats and ontologies. The updated version of VESPUCCI provides easy querying and analyzing of integrated grapevine gene expression (meta)data and can be seamlessly embedded in any analysis workflow or tools. …”
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    A COMPASS for VESPUCCI: A FAIR Way to Explore the Grapevine Transcriptomic Landscape
  2. 22942
    “…The annotation task aimed to identify all table data dealing with packaging permeability measurements and compositions. An Ontological and Terminological Resource (OTR) was used for the annotation process. …”
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    Partial n-Ary relation instances on food packaging composition and permeability extracted from scientific publication tables()
  3. 22943
    “…Different types of knowledge organization systems, including term lists, synonym rings, thesauri, subject heading systems, taxonomies, classification schemes, and ontologies are widely recognized and applied in both modern and traditional information systems. …”
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    Implications of Knowledge Organization Systems for Health Information Exchange and Communication during the COVID-19 Pandemic
  4. 22944
    “…The FAIR Genomes schema v1.1 contains 110 elements in 9 modules. It reuses common ontologies such as NCIT, DUO and EDAM, only introducing new terms when necessary. …”
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    FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research
  5. 22945
    por Kasoka, Kasoka, Weait, Matthew
    Publicado 2022
    “…However, there are still ongoing debates on whether the edifice on which informed consent requirements are grounded, that is, personal autonomy, is philosophically, morally, and practically sound, especially in countries where HIV is an epidemic and/or may have a different ontological perspective or lived reality. This study explores the views of participants from Zambia. …”
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    HIV Testing Autonomy: The Importance of Relationship Factors in HIV Testing to People in Lusaka and Chongwe, Zambia
  6. 22946
    por Imafidon, Elvis
    Publicado 2022
    “…Dominant or hegemonic conceptions of personhood in particular spaces often consist of self‐contained ideas and essentialist ontologies and normativity of what it means to be a person, lack of which results in the denial of personhood and the othering as non‐person or sub‐person. …”
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    Beyond continental and African philosophies of personhood, healthcare and difference
  7. 22947
    “…But here we show that additional discoveries can be made through a knowledge-based approach using protein domains and ontologies (function and phenotype) that considers all coding variants regardless of allele frequency. …”
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    Hypothesis-free phenotype prediction within a genetics-first framework
  8. 22948
    “…The graph is built on the framework of 11 ontologies that maintain its structure, enable mappings and facilitate navigation. …”
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    The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information
  9. 22949
    “…We used named entity recognition (NER) and medical ontologies (RXNorm and SNOMED CT [Systematized Nomenclature of Medicine Clinical Terms]) to identify medication and symptoms. …”
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    Extracting Medical Information From Free-Text and Unstructured Patient-Generated Health Data Using Natural Language Processing Methods: Feasibility Study With Real-world Data
  10. 22950
    por Maciejewicz, Berenika
    Publicado 2022
    “…Care and quality of patients’ lives might be improved by an effort to understand this condition better, and ontological questions like “what makes a person a person?…”
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    Neuroscience of consciousness in the locked‐in syndrome: Prognostic and diagnostic review
  11. 22951
    “…We identified 1301 and 997 RE1s inhuman and mouse genomes, respectively, of which >40% are novel. By employing an ontological analysis we show that REST target genes are significantly enriched in a number of functional classes. …”
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    Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication
  12. 22952
    “…Among other possible uses, this tool helps the study of the evolution of metabolic pathways, the study of the correlation of metabolic networks with properties of those networks, or the improvement of ontologies that represent chemical information.…”
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    Semantic Similarity for Automatic Classification of Chemical Compounds
  13. 22953
    por Drier, Yotam, Domany, Eytan
    Publicado 2011
    “…We performed careful enrichment analysis, controlling the effects of multiple testing in a manner which takes into account the nested dependent structure of gene ontologies. In contradiction to several previous publications, we find that the only biological process or pathway for which statistically significant concordance can be claimed is cell proliferation, a process whose relevance and prognostic value was well known long before gene expression profiling. …”
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    Do Two Machine-Learning Based Prognostic Signatures for Breast Cancer Capture the Same Biological Processes?
  14. 22954
    “…The matchmaking is realized using existing ontologies and reasoning engines and provides a strong case for the semantic integration capabilities provided by Semantic Web research.…”
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    Semantically-Enabled Sensor Plug & Play for the Sensor Web
  15. 22955
    por Schmidt, Jan C.
    Publicado 2011
    “…The paper argues that nearly everything we need today for an ontologically well-informed epistemology of technoscience can be found in the works of Bacon—this position will be called epistemological real-constructivism. …”
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    Toward an epistemology of nano-technosciences: Probing technoscience from a historical perspective: on today’s surprising prevalence and relevance of Francis Bacon
  16. 22956
    por Recchia-Luciani, Angelo N. M.
    Publicado 2011
    “…The present paper proposes a definition for the complex polysemic concepts of consciousness and awareness (in humans as well as in other species), and puts forward the idea of a progressive ontological development of consciousness from a state of ‘childhood’ awareness, in order to explain that humans are not only able to manipulate objects, but also their mental representations. …”
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    Manipulating Representations
  17. 22957
    “…In order to do this an appropriate formal representation method is needed. Ontologies have proven themselves to be one of the best tools to do it. …”
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    A Distributed Reasoning Engine Ecosystem for Semantic Context-Management in Smart Environments
  18. 22958
    por Vercruysse, Steven, Kuiper, Martin
    Publicado 2012
    “…We assessed some issues that arise with the usability of ontologies and other controlled vocabularies, for the encoding of structured information by ‘untrained’ curators. …”
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    Jointly creating digital abstracts: dealing with synonymy and polysemy
  19. 22959
    por Noble, Luke M., Andrianopoulos, Alex
    Publicado 2013
    “…Competence thresholds operate at all levels of biological systems from the molecular (e.g. the cell cycle) to the ontological (e.g. metamorphosis and reproduction). Reproductive competence, an organismal process, is well studied in mammals (sexual maturity) and plants (vegetative phase change), though far less than later stages of terminal differentiation. …”
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    Reproductive competence: a recurrent logic module in eukaryotic development
  20. 22960
    por Prum, Richard O.
    Publicado 2013
    “…Anthropocentric perspectives in aesthetics prevent the recognition of the ontological complexity of the aesthetics of nature, and the aesthetic agency of many non-human organisms. …”
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    Coevolutionary aesthetics in human and biotic artworlds
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