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23521por Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R., Lee, Alexandra J., Kacsoh, Balint Z., Crocker, Alex W., Lewis, Kimberley A., Georghiou, George, Nguyen, Huy N., Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S., Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L., Freddolino, Peter L., Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M., Gemovic, Branislava, Perovic, Vladimir R., Davidović, Radoslav S., Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad R.K., Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C., Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A., Antczak, Magdalena, Fabris, Fabio, Wass, Mark N., Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E., Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J., Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W., Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T., Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L., Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B., Reeb, Jonas, Ritchie, David W., Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico, Falda, Marco, Berselli, Michele, Tosatto, Silvio C.E., Carraro, Marco, Piovesan, Damiano, Ur Rehman, Hafeez, Mao, Qizhong, Zhang, Shanshan, Vucetic, Slobodan, Black, Gage S., Jo, Dane, Suh, Erica, Dayton, Jonathan B., Larsen, Dallas J., Omdahl, Ashton R., McGuffin, Liam J., Brackenridge, Danielle A., Babbitt, Patricia C., Yunes, Jeffrey M., Fontana, Paolo, Zhang, Feng, Zhu, Shanfeng, You, Ronghui, Zhang, Zihan, Dai, Suyang, Yao, Shuwei, Tian, Weidong, Cao, Renzhi, Chandler, Caleb, Amezola, Miguel, Johnson, Devon, Chang, Jia-Ming, Liao, Wen-Hung, Liu, Yi-Wei, Pascarelli, Stefano, Frank, Yotam, Hoehndorf, Robert, Kulmanov, Maxat, Boudellioua, Imane, Politano, Gianfranco, Di Carlo, Stefano, Benso, Alfredo, Hakala, Kai, Ginter, Filip, Mehryary, Farrokh, Kaewphan, Suwisa, Björne, Jari, Moen, Hans, Tolvanen, Martti E.E., Salakoski, Tapio, Kihara, Daisuke, Jain, Aashish, Šmuc, Tomislav, Altenhoff, Adrian, Ben-Hur, Asa, Rost, Burkhard, Brenner, Steven E., Orengo, Christine A., Jeffery, Constance J., Bosco, Giovanni, Hogan, Deborah A., Martin, Maria J., O’Donovan, Claire, Mooney, Sean D., Greene, Casey S., Radivojac, Predrag, Friedberg, Iddo“…Finally, we report that the CAFA community now involves a broad range of participants with expertise in bioinformatics, biological experimentation, biocuration, and bio-ontologies, working together to improve functional annotation, computational function prediction, and our ability to manage big data in the era of large experimental screens.…”
Publicado 2019
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23522“…In sex-specific analysis we identified genes correlating with age and differentially expressed between groups of young, middle-aged and aged. Pathways and gene ontologies (GOs) over-represented in the resulting gene sets were calculated. …”
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23523“…More recent psychological research has linked positive attitudes towards CAM with intuitive thinking, paranormal beliefs, ontological confusions and magical health beliefs, suggesting a common thinking style behind all these variables. …”
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23524por Raposo, A. C., Lebrilla, C. B., Portela, R. W., Goonatilleke, E., Neto, F. A. Dórea, Oriá, A. P.“…Broad-snouted caiman tears presented a wide diversity of ontological functions, with an abundant presence of enzymatic compounds. …”
Publicado 2020
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23525por Gaur, Priya, Saini, Supriya, Ray, Koushik, Asanbekovna, Kushubakova Nadira, Akunov, Almaz, Maripov, Abdirashit, Sarybaev, Akpay, Singh, Shashi Bala, Kumar, Bhuvnesh, Vats, Praveen“…Gene enrichment analysis of ontologies and pathways indicate cellular dynamics and immune response involvement in early day exposure and later stable response. …”
Publicado 2020
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23526por Maros, Máté E., Cho, Chang Gyu, Junge, Andreas G., Kämpgen, Benedikt, Saase, Victor, Siegel, Fabian, Trinkmann, Frederik, Ganslandt, Thomas, Groden, Christoph, Wenz, Holger“…However, studies evaluating machine learning (ML) algorithms on cross-lingual ontological (RadLex) mappings for developing embedded CAR algorithms are lacking. …”
Publicado 2021
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23527por Kaldunski, M. L., Smith, J. R., Hayman, G. T., Brodie, K., De Pons, J. L., Demos, W. M., Gibson, A. C., Hill, M. L., Hoffman, M. J., Lamers, L., Laulederkind, S. J. F., Nalabolu, H. S., Thorat, K., Thota, J., Tutaj, M., Tutaj, M. A., Vedi, M., Wang, S. J., Zacher, S., Dwinell, M. R., Kwitek, A. E.“…To enable use of these data, RGD has developed a robust infrastructure of standardized ontologies, data formats, and disease- and species-centric portals, complemented with a suite of innovative tools for discovery and analysis. …”
Publicado 2021
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23528“…We also developed and piloted a taxonomy for characterizing LHS research projects that may be further developed for use in Learning Community planning, in conjunction with other maturity grids and ontologies. We propose the term “Meta‐Learning Community” to describe the structure and function of the COVID Conversations. …”
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23529por Baars, Erik W., Kienle, Gunver S., Heusser, Peter, Pedersen, Peter A., van Wietmarschen, Herman A., Kiene, Helmut, von Schoen-Angerer, Tido, Hamre, Harald J.“…Future research should focus on appropriate methodologies for the evaluation of effects of AMPs as part of the AM whole medical system, the scientific quality of its non-atomistic holistic ontological position, and the integration of AM and conventional medicine in clinical practice. …”
Publicado 2022
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23530por Morales, Nicolas, Ogbonna, Alex C, Ellerbrock, Bryan J, Bauchet, Guillaume J, Tantikanjana, Titima, Tecle, Isaak Y, Powell, Adrian F, Lyon, David, Menda, Naama, Simoes, Christiano C, Saha, Surya, Hosmani, Prashant, Flores, Mirella, Panitz, Naftali, Preble, Ryan S, Agbona, Afolabi, Rabbi, Ismail, Kulakow, Peter, Peteti, Prasad, Kawuki, Robert, Esuma, Williams, Kanaabi, Micheal, Chelangat, Doreen M, Uba, Ezenwanyi, Olojede, Adeyemi, Onyeka, Joseph, Shah, Trushar, Karanja, Margaret, Egesi, Chiedozie, Tufan, Hale, Paterne, Agre, Asfaw, Asrat, Jannink, Jean-Luc, Wolfe, Marnin, Birkett, Clay L, Waring, David J, Hershberger, Jenna M, Gore, Michael A, Robbins, Kelly R, Rife, Trevor, Courtney, Chaney, Poland, Jesse, Arnaud, Elizabeth, Laporte, Marie-Angélique, Kulembeka, Heneriko, Salum, Kasele, Mrema, Emmanuel, Brown, Allan, Bayo, Stanley, Uwimana, Brigitte, Akech, Violet, Yencho, Craig, de Boeck, Bert, Campos, Hugo, Swennen, Rony, Edwards, Jeremy D, Mueller, Lukas A“…Of crucial importance is a central database able to (1) track breeding materials, (2) store experimental evaluations, (3) record phenotypic measurements using consistent ontologies, (4) store genotypic information, and (5) implement algorithms for analysis, prediction, and selection decisions. …”
Publicado 2022
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23531por Challa, Anup P., Niu, Xinnan, Garrison, Etoi A., Van Driest, Sara L., Bastarache, Lisa M., Lippmann, Ethan S., Lavieri, Robert R., Goldstein, Jeffery A., Aronoff, David M.“…CONCLUSION: Here, we present roots of an agile framework to guide enhanced medication regulations, as well as the ontological and analytical limitations that currently restrict the integration of real-world data into drug safety management during pregnancy. …”
Publicado 2022
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23532por Heong, Valerie, Tan, Tuan Z, Miwa, Maiko, Ye, Jieru, Lim, Diana, Herrington, C Simon, Iida, Yasushi, Yano, Mitsutake, Yasuda, Masanori, Ngoi, Natalie YL, Wong, SB Justin, Okamoto, Aikou, Gourley, Charlie, Hasegawa, Kosei, Tan, David SP, Huang, Ruby YJ“…Our study included 264 women from three different countries (Singapore, Japan, and the UK) and identified four novel immune subtypes (PD1‐high, CTLA4‐high, antigen‐presentation, and pro‐angiogenic subtype) with differentially expressed pathways, and gene ontologies using the NanoString nCounter PanCancer Immune Profiling Panel. …”
Publicado 2021
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23533por Yazdanian, Ramtin, Lee Davis, Richard, Guo, Xiangcen, Lim, Fiona, Dillenbourg, Pierre, Kan, Min-Yen“…Our methodology also allows us to see where job ads fail to provide sufficient predictive signals, pointing to auxiliary data sources (such as Stack Overflow for ICT) and skill ontologies as potential remedies. The success of our method shows how AI can be used to empower learners and educators in the ICT domain (and potentially other domains) with useful and well-curated insights at a moment’s notice, thus helping speed up the process of curricular change.…”
Publicado 2022
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23534por Swertz, Morris, van Enckevort, Esther, Oliveira, José Luis, Fortier, Isabel, Bergeron, Julie, Thurin, Nicolas H., Hyde, Eleanor, Kellmann, Alexander, Pahoueshnja, Romin, Sturkenboom, Miriam, Cunnington, Marianne, Nybo Andersen, Anne-Marie, Marcon, Yannick, Gonçalves, Gonçalo, Gini, Rosa“…Conclusions : We propose to embrace the autonomy of motivated catalogue teams and invest in their collaboration via minimal standardisation efforts such as clear data licensing, persistent identifiers for linking same records between catalogues, minimal metadata ‘common data elements’ using shared ontologies, symmetric architectures for data sharing (push/pull) with clear provenance tracks to process updates and acknowledge original contributors. …”
Publicado 2022
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23535por Funk, Laura, Krawczyk, Marian, Cherba, Maria, Cohen, S. Robin, Dujela, Carren, Nichols, Camille, Stajduhar, Kelli“…Dying at home also often signals potential for preserving ontological security and relational connection in the face of life-threatening illness. …”
Publicado 2023
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23536por Bartoli‐Leonard, Francesca, Zimmer, Jonas, Sonawane, Abhijeet R., Perez, Katelyn, Turner, Mandy E., Kuraoka, Shiori, Pham, Tan, Li, Feifei, Aikawa, Masanori, Singh, Sasha, Brewster, Luke, Aikawa, Elena“…METHODS AND RESULTS: Global proteomics of human vessels with and without PAD from a total of 14 donors revealed an increase of proinflammatory associated ontologies, specifically acute phase and innate immunity. …”
Publicado 2023
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23537por Thessen, Anne E., Cooper, Laurel, Swetnam, Tyson L., Hegde, Harshad, Reese, Justin, Elser, Justin, Jaiswal, Pankaj“…Previous work has demonstrated that knowledge about one species can be applied to another using ontologically-supported knowledge bases that exploit homologous structures and homologous genes. …”
Publicado 2023
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23538por Askari, Nahid, Salek Esfahani, Behnaz, Parvizpour, Sepideh, Shafieipour, Sara, Hadizadeh, Morteza“…ClusterProfiler and GOplot programs were used to analyze function enrichment pathways and gene ontologies for final DEmRNAs. RESULTS: A total of 9 differentially expressed lncRNAs (DElncRNAs) (5 up-regulated and 4 down-regulated), and 856 DEmRNAs (451 up-regulated and 405 down-regulated) between tumor and adjacent normal samples were found. …”
Publicado 2023
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23539“…To shed light on synaptic disease mechanisms potentially linking PANX1 and these four neurological conditions, we performed additional cross-analyses between gene ontologies enriched for the PANX1 synaptic and disease-susceptibility gene sets. …”
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23540“…It also involves the semantic mark-up of biological terms, linking them to biomedical ontologies, then discovering and executing services based on terms that interest the user. …”
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