“…BACKGROUND: Ontologies are invaluable in the life sciences, but building and maintaining ontologies often requires a challenging number of distinct tasks such as running automated reasoners and quality control checks, extracting dependencies and application-specific subsets, generating standard reports, and generating release files in multiple formats. …”
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“…MOTIVATION: Searching for precise terms and terminological definitions in the biomedical data space is problematic, as researchers find overlapping, closely related and even equivalent concepts in a single or multiple ontologies. Search engines that retrieve ontological resources often suggest an extensive list of search results for a given input term, which leads to the tedious task of selecting the best-fit ontological resource (class or property) for the input term and reduces user confidence in the retrieval engines. …”
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“…This paper discusses the uncertainty in the automation of knowledge building from heterogeneous raw datasets. Ontologies play a critical role in such a process by providing a well consolidated support to link and semantically integrate datasets via interoperability, as well as semantic enrichment and annotations. …”
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“…In order to align and complete data, systems may rely on taxonomies and background knowledge that are provided in the form of an ontology. This survey gives an overview of research work on the use of ontologies for accessing incomplete and/or heterogeneous data.…”
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“…A bottom-up approach was used to build the ontology, best ontology practices described in the literature were followed and the minimum information to reference an external ontology term (MIREOT) methodology was used to add external terms of other ontologies when possible. …”
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“…The Protein Ontology (PRO) provides an ontological representation of protein-related entities, ranging from protein families to proteoforms to complexes. …”
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“…An ontology-mediated query (OMQ) consists of a database query paired with an ontology. …”
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“…A most promising approach to answering queries in ontology-based data access (OBDA) is through query rewriting. …”
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“…However, Shrapnel and Costa argue that exotic causal structures, such as causal symmetry, are incapable of explaining quantum behaviour as arising as a result of noncontextual ontological properties of the world. This is particularly worrying for Einstein–Bell realism and classical ontology. …”
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“…This theoretical article offers a diachronic analysis that is a rebuttal of ontological hegemony of disability as negative. The article is premised on the Ubuntu paradigm from which African wisdom is mostly anchored in idioms and proverbs. …”
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“…An ontology is a computable representation of the different parts of an organism and its different developmental stages as well as the relationships between them. …”
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“…The Gene Ontology Meta Annotator for Plants (GOMAP) is an optimized, high-throughput, and reproducible pipeline for genome-scale GO annotation of plants. …”
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“…The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and standardize these terms. …”
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“…BACKGROUND: Effective response to public health emergencies, such as we are now experiencing with COVID-19, requires data sharing across multiple disciplines and data systems. Ontologies offer a powerful data sharing tool, and this holds especially for those ontologies built on the design principles of the Open Biomedical Ontologies Foundry. …”
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“…A key approach to represent computer-based knowledge in a particular domain is an ontology. As defined in informatics, an ontology defines a domain’s terms through their relationships with other terms in the ontology. …”
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“…The Evidence and Conclusion Ontology (ECO) is a community resource that provides an ontology of terms used to capture the type of evidence that supports biomedical annotations and assertions. …”
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“…This essay explores the potential of solidarity economy (SE) as theory, practice, and movement, to engender an ontological politics to create and sustain other worlds that can resolve the existential crises of ecological destruction and historic inequalities. …”
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“…Further work, including alignment to a top‐level ontology, expanding the vocabulary, and defining relations between vocabulary is required to formally build out an ontology for these uses.…”
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