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561“…BACKGROUND: Biomedical computational systems benefit from ontologies and their associated mappings. Indeed, aligned ontologies in life sciences play a central role in several semantic-enabled tasks, especially in data exchange. …”
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562por Van Langenhove, Luk“…It involves a radical rethink of the social ontology and is to be seen as an alternative to the traditional conceptualization of society as a social structure that is opposed to individual agency. …”
Publicado 2023
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563“…Second, it automatically shows general ontology terms related to the original query, which often do not even appear directly in the abstract. …”
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564por Vinayagam, Arunachalam, del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, König, Rainer“…DESCRIPTION: We recently established a learning system for automated annotation, trained with a broad variety of different organisms to predict the standardised annotation terms from Gene Ontology (GO). Now, this method has been made available to the public via our web-service GOPET (Gene Ontology term Prediction and Evaluation Tool). …”
Publicado 2006
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565“…BACKGROUND: Automated comparison of complete sets of genes encoded in two genomes can provide insight on the genetic basis of differences in biological traits between species. Gene ontology (GO) is used as a common vocabulary to annotate genes for comparison. …”
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566“…RESULTS: This document shows the results obtained by the application of our method to BioCreative tasks 2.1 and 2.2, where it identified Gene Ontology annotations and their evidence in a set of articles. …”
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567“…BACKGROUND: An adequate and expressive ontological representation of biological organisms and their parts requires formal reasoning mechanisms for their relations of physical aggregation and containment. …”
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568“…Here we study the use of this technique to predict functional annotations from the Gene Ontology for seven genomes: Saccharomyces cerevisiae, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, Rattus norvegicus, Mus musculus, and Homo sapiens. …”
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569“…Here, we present a quantitative study of sequence and function divergence, based on the Gene Ontology classification of function. We determined the relationship between sequence divergence and function divergence in 6828 protein families from the PFAM database. …”
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570por Kruger, Adele, Hofmann, Oliver, Carninci, Piero, Hayashizaki, Yoshihide, Hide, Winston“…The Developmental eVOC ontologies presented here are simplified orthogonal ontologies describing the temporal and spatial distribution of developmental human and mouse anatomy. …”
Publicado 2007
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571“…Here, we also discuss about ontology-driven similarity measure of functional groups and uses of such novel ontology for pharmacophore searching and de-novo ligand designing.…”
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572“…BACKGROUND: Much effort is currently made to develop the Gene Ontology (GO). Due to the dynamic nature of information it addresses, GO undergoes constant updates whose results are released at regular intervals as separate versions. …”
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573“…To address the challenges of information integration and retrieval, the computational genomics community increasingly has come to rely on the methodology of creating annotations of scientific literature using terms from controlled structured vocabularies such as the Gene Ontology (GO). Here we address the question of what such annotations signify and of how they are created by working biologists. …”
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574por Coulet, Adrien, Smaïl-Tabbone, Malika, Benlian, Pascale, Napoli, Amedeo, Devignes, Marie-Dominique“…In turn, the results of this study may be reused in ontology modelling and data integration.…”
Publicado 2008
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575“…The State-of-the-art technologies such as GOPubmed use simple keyword-based techniques for retrieving abstracts from the PubMed and linking them to the Gene Ontology (GO). This paper changes the paradigm by introducing semantics enabled technique to link the PubMed to the Gene Ontology, called, SEGOPubmed for ontology-based browsing. …”
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576por Holloway, Ele“…A small group of around 40 people came together at the Chancellors Conference Centre in Manchester for the Ontologies Workshop, chaired by Alan Rector and Robert Stevens. …”
Publicado 2002
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577“…The primary application of the ontology will be to develop forms for entering information into databases, and consequently allowing queries, taking advantage of the structure provided by the ontology. …”
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578por Milward, David, Bjäreland, Marcus, Hayes, William, Maxwell, Michelle, Öberg, Lisa, Tilford, Nick, Thomas, James, Hale, Roger, Knight, Sylvia, Barnes, Julie“…This paper describes a novel ontology-based interactive information extraction (OBIIE) framework and a specific OBIIE system. …”
Publicado 2005
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579“…BACKGROUND: The Gene Ontology is a controlled vocabulary for representing knowledge related to genes and proteins in a computable form. …”
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580“…RESULTS: We developed ontology-based models of neuroanatomy to enable symbolic lookup, logical inference and mathematical modeling of neural systems. …”
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