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41por Smith, Barry, Ceusters, Werner, Klagges, Bert, Köhler, Jacob, Kumar, Anand, Lomax, Jane, Mungall, Chris, Neuhaus, Fabian, Rector, Alan L, Rosse, Cornelius“…To enhance the treatment of relations in biomedical ontologies we advance a methodology for providing consistent and unambiguous formal definitions of the relational expressions used in such ontologies in a way designed to assist developers and users in avoiding errors in coding and annotation. …”
Publicado 2005
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42por Hunter, Lawrence“…A response to Life sentences: Ontology recapitulates philology by Sydney Brenner, Genome Biology 2002, 3:comment1006.1-1006.2.…”
Publicado 2002
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43“…Although a large amount of statements encoded in current biomedical ontologies is taxon-dependent there is no obvious or standard way for introducing taxon information into an integrative ontology architecture, supposedly because of ongoing controversies about the ontological nature of species and taxa. …”
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44“…RESULTS: We provide both an ontological analysis of biological sequences and a formal representation that can be used in knowledge-based applications and other ontologies. …”
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45por Topalis, Pantelis, Mitraka, Elvira, Bujila, Ioana, Deligianni, Elena, Dialynas, Emmanuel, Siden-Kiamos, Inga, Troye-Blomberg, Marita, Louis, Christos“…METHODS: The OBOEdit2 software was used for the construction of the ontology. IDOMAL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium. …”
Publicado 2010
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46“…IMGT(®), the international ImMunoGeneTics information system(®) (http://www.imgt.org) has reached that goal through the building of a unique ontology, IMGT-ONTOLOGY, which represents the first ontology for the formal representation of knowledge in immunogenetics and immunoinformatics. …”
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47por Röhl, Johannes“…Because of their importance in the field a formal ontological description of mechanisms is desirable. …”
Publicado 2012
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48“…This paper presents a study on the effects, in terms of precision and recall, of using a data preparation technique, called SemPrune, which is built on domain ontology. SemPrune is intended for pre- and post-processing phases of data mining. …”
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49por Osumi-Sutherland, David, Marygold, Steven J, Millburn, Gillian H, McQuilton, Peter A, Ponting, Laura, Stefancsik, Raymund, Falls, Kathleen, Brown, Nicholas H, Gkoutos, Georgios V“…BACKGROUND: Phenotype ontologies are queryable classifications of phenotypes. …”
Publicado 2013
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50“…BACKGROUND: Anatomy ontologies are query-able classifications of anatomical structures. …”
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51por Jensen, Mark, Cox, Alexander P, Chaudhry, Naveed, Ng, Marcus, Sule, Donat, Duncan, William, Ray, Patrick, Weinstock-Guttman, Bianca, Smith, Barry, Ruttenberg, Alan, Szigeti, Kinga, Diehl, Alexander D“…We have imported and utilize over 700 classes from related ontology efforts including the Foundational Model of Anatomy, Ontology for Biomedical Investigations, and Protein Ontology. …”
Publicado 2013
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53por Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G“…OMP has been built on the foundations of the Basic Formal Ontology and the Phenotype and Trait Ontology. Terms have logical definitions that can facilitate computational searching of phenotypes and their associated genes. …”
Publicado 2014
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54“…RESULTS: We developed an ontology for periodontitis called Periodontitis-Ontology (PeriO). …”
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55por Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H., Bug, Bill, Chibucos, Marcus C., Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A., He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L., Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A., Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Soldatova, Larisa N., Stoeckert, Christian J., Taylor, Chris F., Torniai, Carlo, Turner, Jessica A., Vita, Randi, Whetzel, Patricia L., Zheng, Jie“…The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. …”
Publicado 2016
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57“…We describe an ontology for cell types that covers the prokaryotic, fungal, animal and plant worlds. …”
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58por Sargsyan, Astghik, Kodamullil, Alpha Tom, Baksi, Shounak, Darms, Johannes, Madan, Sumit, Gebel, Stephan, Keminer, Oliver, Jose, Geena Mariya, Balabin, Helena, DeLong, Lauren Nicole, Kohler, Manfred, Jacobs, Marc, Hofmann-Apitius, Martin“…The ontology is also deposited in BioPortal at https://bioportal.bioontology.org/ontologies/COVID-19. …”
Publicado 2020
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59“…Integrating political philosophy with analytic ontology, we then unfold a theoretical framework for gastrospaces: first, we show the limits of the concept of “third place;” second, we lay out the foundations for an ontological model of gastrospaces; third, we introduce five features of gastrospaces that connect their ontology with their political value and with the realization of justice goals. …”
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