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741por Kohne, Annemarie Catharina Johanna, de Graauw, Lukas Peter, Leenhouts-van der Maas, Reina, Van Os, Jim“…Therefore, the question regarding the ontology of mental disorder remains: what is a mental disorder, exactly? …”
Publicado 2023
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742“…An application ontology often reuses terms from other related, compatible ontologies. …”
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743“…A delicate semantic distinction—categorizing planned processes based on the objectives they seek to fulfill vs. categorizing them by the actions or mechanisms they utilize—helps organize and facilitate this endeavor. To bring an ontological lens to process modeling, we employ the Open Biological and Biomedical Ontology Foundry ontological framework to organize two main classes of the FoodOn upper-level material processing hierarchy according to objective and mechanism, respectively. …”
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745“…METHODS: We aim to establish an ontology encapsulating the broad spectrum of FDs, constructed in the Web Ontology Language format using the Protégé ontology editor, adhering to ontology development life cycle principles. …”
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746por Menotti, Laura, Silvello, Gianmaria, Atzori, Manfredo, Boytcheva, Svetla, Ciompi, Francesco, Di Nunzio, Giorgio Maria, Fraggetta, Filippo, Giachelle, Fabio, Irrera, Ornella, Marchesin, Stefano, Marini, Niccolò, Müller, Henning, Primov, Todor“…The ontology is organized into 5 semantic areas that defines an ontological template to model any disease of interest in histopathology. …”
Publicado 2023
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747“…RESULTS: In this study, we propose an approach for protein and its encoding gene synonym integration based on protein ontology. The workflow of protein and gene synonym integration is composed of three modules: data acquisition, entity and attribute alignment, attribute integration and deduplication. …”
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748“…BACKGROUND: Ontologies play a key role in the management of medical knowledge because they have the properties to support a wide range of knowledge-intensive tasks. …”
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749por Lin, Asiyah Yu, Arabandi, Sivaram, Beale, Thomas, Duncan, William D., Hicks, Amanda, Hogan, William R., Jensen, Mark, Koppel, Ross, Martínez-Costa, Catalina, Nytrø, Øystein, Obeid, Jihad S., de Oliveira, Jose Parente, Ruttenberg, Alan, Seppälä, Selja, Smith, Barry, Soergel, Dagobert, Zheng, Jie, Schulz, Stefan“…This White Paper outlines pitfalls, opportunities, and solutions and recommends increased investment in research and development of ontologies with computable semantics for a new generation of EHRs.…”
Publicado 2023
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750por Thompson, Julie D., Holbrook, Stephen R., Katoh, Kazutaka, Koehl, Patrice, Moras, Dino, Westhof, Eric, Poch, Olivier“…Here, we present MAO, a new ontology for multiple alignments of nucleic and protein sequences. …”
Publicado 2005
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751“…BACKGROUND: The search for enriched (aka over-represented or enhanced) ontology terms in a list of genes obtained from microarray experiments is becoming a standard procedure for a system-level analysis. …”
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752“…In particular, placing the results in the context of other available functional genomics data, such as existing bio-ontologies, has already provided substantial improvement for detecting and categorizing genes of interest. …”
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753por Sealfon, Rachel SG, Hibbs, Matthew A, Huttenhower, Curtis, Myers, Chad L, Troyanskaya, Olga G“…Several excellent software tools for navigating the gene ontology have been developed. However, no existing system provides an interactively expandable graph-based view of the gene ontology hierarchy. …”
Publicado 2006
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754“…Recent work shows, however, that there is a demand for a more comprehensive ontology that would go along with the corpus. We propose a complete OWL ontology built on top of the GENIA ontology utilizing the GENIA corpus. …”
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755“…RESULTS: A novel method was proposed to predict the Gene Ontology (GO) functions of proteins from the pocket similarity network, which is constructed according to the structure similarities of pockets. …”
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756por Degtyarenko, Kirill, de Matos, Paula, Ennis, Marcus, Hastings, Janna, Zbinden, Martin, McNaught, Alan, Alcántara, Rafael, Darsow, Michael, Guedj, Mickaël, Ashburner, Michael“…In addition to molecular entities, ChEBI contains groups (parts of molecular entities) and classes of entities. ChEBI includes an ontological classification, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. …”
Publicado 2008
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757por Hong, Eurie L., Balakrishnan, Rama, Dong, Qing, Christie, Karen R., Park, Julie, Binkley, Gail, Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert S., Oughtred, Rose, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Zhu, Kathy K., Dolinski, Kara, Botstein, David, Cherry, J. Michael“…Although published data from traditional experimental methods are the primary sources of evidence supporting Gene Ontology (GO) annotations for a gene product, high-throughput experiments and computational predictions can also provide valuable insights in the absence of an extensive body of literature. …”
Publicado 2008
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760por McShan, D. C.“…Specifically, we focus on the identification of amino acids and consider ways in which the inference of biochemical ontologies for metabolites will be improved in the future.…”
Publicado 2005
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