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861
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862“…We build on and enhance the categorisation of emotion, affect and mood within the previously developed Emotion Ontology, and that of psychiatric disorders in the Mental Disease Ontology. …”
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863por Schriml, Lynn M, Mitraka, Elvira, Munro, James, Tauber, Becky, Schor, Mike, Nickle, Lance, Felix, Victor, Jeng, Linda, Bearer, Cynthia, Lichenstein, Richard, Bisordi, Katharine, Campion, Nicole, Hyman, Brooke, Kurland, David, Oates, Connor Patrick, Kibbey, Siobhan, Sreekumar, Poorna, Le, Chris, Giglio, Michelle, Greene, Carol“…The Human Disease Ontology (DO) (http://www.disease-ontology.org), database has undergone significant expansion in the past three years. …”
Publicado 2019
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864“…BACKGROUND: Gene Ontology (GO) is a useful resource of controlled vocabulary that provides information about annotated genes. …”
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865por Kuznetsova, Irina, Lugmayr, Artur, Siira, Stefan J., Rackham, Oliver, Filipovska, Aleksandra“…Typically, gene ontology terms are represented as tree-maps that enclose all data into defined space. …”
Publicado 2019
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866por Livitckaia, Kristina, Koutkias, Vassilis, Kouidi, Evangelia, van Gils, Mark, Maglaveras, Nikolaos, Chouvarda, Ioanna“…First, we defined the ontology specification (i.e., purpose, scope, target users, etc.). …”
Publicado 2019
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867por Overton, James A., Vita, Randi, Dunn, Patrick, Burel, Julie G., Bukhari, Syed Ahmad Chan, Cheung, Kei-Hoi, Kleinstein, Steven H., Diehl, Alexander D., Peters, Bjoern“…RESULTS: We here describe our attempts to use ontologies to cross-compare cell types and marker patterns (also referred to as gating definitions). …”
Publicado 2019
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868por Eisenberg, Ian W., Bissett, Patrick G., Zeynep Enkavi, A., Li, Jamie, MacKinnon, David P., Marsch, Lisa A., Poldrack, Russell A.“…Within tasks and surveys, however, the ontology identifies reliable individual traits and reveals opportunities for theoretic synthesis. …”
Publicado 2019
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869por Uciteli, Alexandr, Kropf, Stefan, Weiland, Timo, Meese, Stefanie, Graef, Klaus, Rohrer, Sabrina, Schurr, Marc O., Bartussek, Wolfram, Goller, Christoph, Blohm, Philipp, Seidel, Robin, Bayer, Christian, Kernenbach, Manuel, Pfeiffer, Kathrin, Lauer, Wolfgang, Meyer, Jörg-Uwe, Witte, Michael, Herre, Heinrich“…In this paper, we present (1) the Search Ontology (SON) v2.0, (2) an Excel template for specifying search queries, and (3) the Search Ontology Generator (SONG), which generates complex queries out of the Excel template. …”
Publicado 2019
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870por Walls, Ramona L., Cooper, Laurel, Elser, Justin, Gandolfo, Maria Alejandra, Mungall, Christopher J., Smith, Barry, Stevenson, Dennis W., Jaiswal, Pankaj“…This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. …”
Publicado 2019
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871por Hinderer, Eugene W., Flight, Robert M., Dubey, Rashmi, MacLeod, James N., Moseley, Hunter N. B.“…Gene-annotation enrichment is a common method for utilizing ontology-based annotations in gene and gene-product centric knowledgebases. …”
Publicado 2019
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872“…We undertook a large-scale gene function analysis using gene ontology to identify significantly enriched biological pathways and molecular functions associated with our gene set. …”
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873“…Lastly, PyRadiomics Extension parses this dictionary as a W3C‐compliant Semantic Web “triple store” (i.e., list of subject‐predicate‐object statements) with relevant semantic meta‐labels drawn from the radiation oncology ontology and radiomics ontology. The output can be published on an SPARQL endpoint, and can be remotely examined via SPARQL queries or to a comma separated file for further analysis. …”
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874“…This Editorial first introduces the background of the vaccine and drug relations and how biomedical terminologies and ontologies have been used to support their studies. …”
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875“…An analysis of two kinds of multiversism, a Zermelian form and Skolemite form, leads to the conclusion that the kind of maximality captured by an axiom differs substantially according to background ontology.…”
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876por Collier, Nigel, Kawazoe, Ai, Jin, Lihua, Shigematsu, Mika, Dien, Dinh, Barrero, Roberto A., Takeuchi, Koichi, Kawtrakul, Asanee“…At the heart of the system is an application ontology which serves the dual purpose of enabling advanced searches on the mined facts and of allowing the system to make intelligent inferences for assessing the priority of events. …”
Publicado 2007
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877por Poupin, Nathalie, Vinson, Florence, Moreau, Arthur, Batut, Aurélie, Chazalviel, Maxime, Colsch, Benoit, Fouillen, Laetitia, Guez, Sarah, Khoury, Spiro, Dalloux-Chioccioli, Jessica, Tournadre, Anthony, Le Faouder, Pauline, Pouyet, Corinne, Van Delft, Pierre, Viars, Fanny, Bertrand-Michel, Justine, Jourdan, Fabien“…This mapping is based on the computation of a distance between molecules in ChEBI ontology. RESULTS: We applied our method to a chemical library (968 lipids) and an experimental dataset (32 modulated lipids) and showed that using ontology-based mapping improves and facilitates the link with genome scale metabolic networks. …”
Publicado 2020
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878“…MOTIVATION: Over the past years, significant resources have been invested into formalizing biomedical ontologies. Formal axioms in ontologies have been developed and used to detect and ensure ontology consistency, find unsatisfiable classes, improve interoperability, guide ontology extension through the application of axiom-based design patterns and encode domain background knowledge. …”
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879“…Semantic Sensor Web (SSW) links the semantic web technique with the sensor network, which utilizes sensor ontology to describe sensor information. Annotating sensor data with different sensor ontologies can be of help to implement different sensor systems’ inter-operability, which requires that the sensor ontologies themselves are inter-operable. …”
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880“…Annotating the functional properties of gene products, i.e., RNAs and proteins, is a fundamental task in biology. The Gene Ontology database (GO) was developed to systematically describe the functional properties of gene products across species, and to facilitate the computational prediction of gene function. …”
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