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  1. 1161
    “…BACKGROUND: The importance of ontologies in the biomedical domain is generally recognized. …”
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    Effects of Guideline-Based Training on the Quality of Formal Ontologies: A Randomized Controlled Trial
  2. 1162
    “…Here, we describe an ‘Ontologically BAsed Molecular Signature’ (OBAMS) method that identifies novel cellular biomarkers and infers biological functions as characteristics of particular cell types. …”
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    Ontology based molecular signatures for immune cell types via gene expression analysis
  3. 1163
    “…Despite the numerous ontologies available, one area currently lacking a robust ontology is the description of vertebrate traits. …”
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    The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species
  4. 1164
    “…BACKGROUND: The Clinical Measurement Ontology (CMO), Measurement Method Ontology (MMO), and Experimental Condition Ontology (XCO) were originally developed at the Rat Genome Database (RGD) to standardize quantitative rat phenotype data in order to integrate results from multiple studies into the PhenoMiner database and data mining tool. …”
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    The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications
  5. 1165
    por Yang, Lei, Tang, Xianglong
    Publicado 2014
    “…Therefore, we propose a method combining clique-based method of prediction and gene ontology (GO) annotations to overcome the shortcoming and improve the accuracy of predictions. …”
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    Protein-Protein Interactions Prediction Based on Iterative Clique Extension with Gene Ontology Filtering
  6. 1166
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    Ontology-Driven Monitoring of Patient's Vital Signs Enabling Personalized Medical Detection and Alert
  7. 1167
    por Köhler, Sebastian, Doelken, Sandra C., Mungall, Christopher J., Bauer, Sebastian, Firth, Helen V., Bailleul-Forestier, Isabelle, Black, Graeme C. M., Brown, Danielle L., Brudno, Michael, Campbell, Jennifer, FitzPatrick, David R., Eppig, Janan T., Jackson, Andrew P., Freson, Kathleen, Girdea, Marta, Helbig, Ingo, Hurst, Jane A., Jähn, Johanna, Jackson, Laird G., Kelly, Anne M., Ledbetter, David H., Mansour, Sahar, Martin, Christa L., Moss, Celia, Mumford, Andrew, Ouwehand, Willem H., Park, Soo-Mi, Riggs, Erin Rooney, Scott, Richard H., Sisodiya, Sanjay, Vooren, Steven Van, Wapner, Ronald J., Wilkie, Andrew O. M., Wright, Caroline F., Vulto-van Silfhout, Anneke T., de Leeuw, Nicole, de Vries, Bert B. A., Washingthon, Nicole L., Smith, Cynthia L., Westerfield, Monte, Schofield, Paul, Ruef, Barbara J., Gkoutos, Georgios V., Haendel, Melissa, Smedley, Damian, Lewis, Suzanna E., Robinson, Peter N.
    Publicado 2014
    “…The Human Phenotype Ontology (HPO) project, available at http://www.human-phenotype-ontology.org, provides a structured, comprehensive and well-defined set of 10,088 classes (terms) describing human phenotypic abnormalities and 13,326 subclass relations between the HPO classes. …”
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    The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
  8. 1168
    “…AVAILABILITY: Sufficient material to reproduce our results is available, including documentation, ontology, code and datasets, at http://purl.obolibrary.org/obo/aero.…”
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    The Logic of Surveillance Guidelines: An Analysis of Vaccine Adverse Event Reports from an Ontological Perspective
  9. 1169
    por Nakikj, Drashko, Weng, Chunhua
    Publicado 2013
    “…We extended an open-source ontology, VIVO, to represent the research and educational resources in an academic biomedical informatics department to enable ontology-based information storage and retrieval. …”
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    Extending VIVO Ontology to Represent Research and Educational Resources in an Academic Biomedical Informatics Department
  10. 1170
    por Hancock, John M.
    Publicado 2014
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    Commentary on Shimoyama et al. (2012): three ontologies to define phenotype measurement data
  11. 1171
    por Chen, Xiaoshu, Zhang, Jianzhi
    Publicado 2013
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    Correction: The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data
  12. 1172
    “…CONCLUSIONS: The additional contextual information captured by annotation extensions improves the utility of functional annotation by representing dependencies between annotations to terms in the different ontologies of GO, external ontologies, or an organism’s gene products. …”
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    A method for increasing expressivity of Gene Ontology annotations using a compositional approach
  13. 1173
    “…In addition, the absence of connection between 3D models and anatomical ontologies makes it difficult and time-consuming to set up and access to the anatomical content of complex 3D objects. …”
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    My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models
  14. 1174
    por Gan, Mingxin
    Publicado 2014
    “…Successful applications of the gene ontology to the inference of functional relationships between gene products in recent years have raised the need for computational methods to automatically calculate semantic similarity between gene products based on semantic similarity of gene ontology terms. …”
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    Correlating Information Contents of Gene Ontology Terms to Infer Semantic Similarity of Gene Products
  15. 1175
    “…RESULTS: We carried out Bayesian inference of Gene Ontology (GO) term annotations of genes by employing the directed acyclic graph structure of GO and the network of protein-protein interactions (PPIs). …”
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    Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions
  16. 1176
    “…The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies. Spatial reasoning is further enhanced in anatomy ontologies by integrating spatial relations such as dorsal_to into class descriptions (e.g., ‘dorsolateral placode’ dorsal_to some ‘epibranchial placode’). …”
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    Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology
  17. 1177
    “…In this study, we attempt to develop an effective method for distinguishing AMD-related genes. Gene ontology and KEGG enrichment analyses of known AMD-related genes were performed, and a classification system was established. …”
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    Gene Ontology and KEGG Enrichment Analyses of Genes Related to Age-Related Macular Degeneration
  18. 1178
    por Snow, Diane M.
    Publicado 2014
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    Commentary on: “Facilitating transparency in spinal cord injury studies using data standards and ontologies”
  19. 1179
    “…Gene function curation of the literature with Gene Ontology (GO) concepts is one particularly time-consuming task in genomics, and the help from bioinformatics is highly requested to keep up with the flow of publications. …”
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    Closing the loop: from paper to protein annotation using supervised Gene Ontology classification
  20. 1180
    “…DESCRIPTION: As a step towards development of such a resource, and to enable large-scale integration of phenotypic data across vertebrates, we created the Vertebrate Taxonomy Ontology (VTO), a semantically defined taxonomic resource derived from the integration of existing taxonomic compilations, and freely distributed under a Creative Commons Zero (CC0) public domain waiver. …”
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    The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes
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