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121por Vaz, Cátia, Francisco, Alexandre P, Silva, Mickael, Jolley, Keith A, Bray, James E, Pouseele, Hannes, Rothganger, Joerg, Ramirez, Mário, Carriço, João A“…In this paper, we present an ontology designed for the sequence-based microbial typing field, capable of describing any of the sequence-based typing methodologies currently in use and being developed, including novel NGS based methods. …”
Publicado 2014
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122“…Despite the indispensable need of thorough domain knowledge in ontology construction, most software tools for ontology construction are designed for knowledge engineers and not for domain experts to use. …”
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123por Sarntivijai, Sirarat, Lin, Yu, Xiang, Zuoshuang, Meehan, Terrence F, Diehl, Alexander D, Vempati, Uma D, Schürer, Stephan C, Pang, Chao, Malone, James, Parkinson, Helen, Liu, Yue, Takatsuki, Terue, Saijo, Kaoru, Masuya, Hiroshi, Nakamura, Yukio, Brush, Matthew H, Haendel, Melissa A, Zheng, Jie, Stoeckert, Christian J, Peters, Bjoern, Mungall, Christopher J, Carey, Thomas E, States, David J, Athey, Brian D, He, Yongqun“…The community-based Cell Line Ontology (CLO) is a member of the OBO Foundry library that covers the domain of cell lines. …”
Publicado 2014
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124por Vita, Randi, Overton, James A., Seymour, Emily, Sidney, John, Kaufman, Jim, Tallmadge, Rebecca L., Ellis, Shirley, Hammond, John, Butcher, Geoff W., Sette, Alessandro, Peters, Bjoern“…PURPOSE: To correctly represent MHC related data in The Immune Epitope Database (IEDB), we built upon a previously established MHC ontology and created an ontology to represent MHC molecules as they relate to immunological experiments. …”
Publicado 2016
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125por Jupp, Simon, Malone, James, Burdett, Tony, Heriche, Jean-Karim, Williams, Eleanor, Ellenberg, Jan, Parkinson, Helen, Rustici, Gabriella“…DESCRIPTION: We present the Cellular Microscopy Phenotype Ontology (CMPO), a species neutral ontology for describing phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. …”
Publicado 2016
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126por Fernández-Breis, Jesualdo Tomás, Chiba, Hirokazu, Legaz-García, María del Carmen, Uchiyama, Ikuo“…DESCRIPTION: The need for a common ontology has led to the creation of the Orthology Ontology (ORTH) following the best practices in ontology construction. …”
Publicado 2016
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127por Köhler, Sebastian, Vasilevsky, Nicole A., Engelstad, Mark, Foster, Erin, McMurry, Julie, Aymé, Ségolène, Baynam, Gareth, Bello, Susan M., Boerkoel, Cornelius F., Boycott, Kym M., Brudno, Michael, Buske, Orion J., Chinnery, Patrick F., Cipriani, Valentina, Connell, Laureen E., Dawkins, Hugh J.S., DeMare, Laura E., Devereau, Andrew D., de Vries, Bert B.A., Firth, Helen V., Freson, Kathleen, Greene, Daniel, Hamosh, Ada, Helbig, Ingo, Hum, Courtney, Jähn, Johanna A., James, Roger, Krause, Roland, F. Laulederkind, Stanley J., Lochmüller, Hanns, Lyon, Gholson J., Ogishima, Soichi, Olry, Annie, Ouwehand, Willem H., Pontikos, Nikolas, Rath, Ana, Schaefer, Franz, Scott, Richard H., Segal, Michael, Sergouniotis, Panagiotis I., Sever, Richard, Smith, Cynthia L., Straub, Volker, Thompson, Rachel, Turner, Catherine, Turro, Ernest, Veltman, Marijcke W.M., Vulliamy, Tom, Yu, Jing, von Ziegenweidt, Julie, Zankl, Andreas, Züchner, Stephan, Zemojtel, Tomasz, Jacobsen, Julius O.B., Groza, Tudor, Smedley, Damian, Mungall, Christopher J., Haendel, Melissa, Robinson, Peter N.“…The three components of the Human Phenotype Ontology (HPO; www.human-phenotype-ontology.org) project are the phenotype vocabulary, disease-phenotype annotations and the algorithms that operate on these. …”
Publicado 2017
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129por Denny, Paul, Feuermann, Marc, Hill, David P., Lovering, Ruth C., Plun-Favreau, Helene, Roncaglia, Paola“…The growing knowledge about autophagic mechanisms needs to be collected in a computable and shareable format to allow its use in data representation and interpretation. The Gene Ontology (GO) is a freely available resource that describes how and where gene products function in biological systems. …”
Publicado 2018
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130“…To support semantic inter-operability between ontology-based biomedical systems, it is necessary to identify the correspondences between these information, which is commonly known as biomedical ontology matching. …”
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131por McComb, Dave“…This chapter discusses the terms: “vocabulary,” “taxonomy,” and “ontology.” Terms and facts are semantic constructs. …”
Publicado 2003
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132“…This article focuses on an ontology construction for collaborative decision making. …”
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133“…The paper is devoted to new aspects of ontology-based approach to control the behavior of Edge Computing devices. …”
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134por Filk, Thomas“…It should be emphasized that this interpretation is not meant to be a serious attempt to describe the ontology of our world, but its purpose is to make it obvious that, besides Bohmian mechanics, presumably many other ontological interpretations of quantum theory exist.…”
Publicado 2018
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135por Köhler, Sebastian, Gargano, Michael, Matentzoglu, Nicolas, Carmody, Leigh C, Lewis-Smith, David, Vasilevsky, Nicole A, Danis, Daniel, Balagura, Ganna, Baynam, Gareth, Brower, Amy M, Callahan, Tiffany J, Chute, Christopher G, Est, Johanna L, Galer, Peter D, Ganesan, Shiva, Griese, Matthias, Haimel, Matthias, Pazmandi, Julia, Hanauer, Marc, Harris, Nomi L, Hartnett, Michael J, Hastreiter, Maximilian, Hauck, Fabian, He, Yongqun, Jeske, Tim, Kearney, Hugh, Kindle, Gerhard, Klein, Christoph, Knoflach, Katrin, Krause, Roland, Lagorce, David, McMurry, Julie A, Miller, Jillian A, Munoz-Torres, Monica C, Peters, Rebecca L, Rapp, Christina K, Rath, Ana M, Rind, Shahmir A, Rosenberg, Avi Z, Segal, Michael M, Seidel, Markus G, Smedley, Damian, Talmy, Tomer, Thomas, Yarlalu, Wiafe, Samuel A, Xian, Julie, Yüksel, Zafer, Helbig, Ingo, Mungall, Christopher J, Haendel, Melissa A, Robinson, Peter N“…The Human Phenotype Ontology (HPO, https://hpo.jax.org) was launched in 2008 to provide a comprehensive logical standard to describe and computationally analyze phenotypic abnormalities found in human disease. …”
Publicado 2020
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136por Egg, Matthias“…Existing proposals concerning the ontology of quantum mechanics (QM) either involve speculation that goes beyond the scientific evidence or abandon realism about large parts of QM. …”
Publicado 2021
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137“…There are multiple disease ontologies used in data sources and publications, each having its hierarchy. …”
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138por Karthik, Samyukta, Huang, Dake, Delgado, Yaritza, Laing, Justin J., Peltekian, Lila, Iverson, Gabrielle N., Grady, Fillan, Miller, Rebecca L., McCann, Corey M., Fritzsch, Bernd, Iskusnykh, Igor Y., Chizhikov, Victor V., Geerling, Joel C.“…Here, we present the foundation of a developmental‐genetic ontology that classifies PB neurons based on their intrinsic, molecular features. …”
Publicado 2022
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139“…CONCLUSIONS: This effort represents the first attempt at linking molecule ontology with cell ontology, in IMGT-ONTOLOGY, the well established ontology in immunogenetics and immunoinformatics, and a paradigm for life science biology. …”
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140por Gremse, Marion, Chang, Antje, Schomburg, Ida, Grote, Andreas, Scheer, Maurice, Ebeling, Christian, Schomburg, Dietmar“…BTO, the BRENDA Tissue Ontology (http://www.BTO.brenda-enzymes.org) represents a comprehensive structured encyclopedia of tissue terms. …”
Publicado 2011
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