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161por Stevens, Robert“…Controlled vocabularies are often simply lists of words, but may be viewed as a kind of ontology. Ideally ontologies are structurally enriched with relationships between terms within the vocabulary. …”
Publicado 2002
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163por McCray, Alexa T.“…We recently integrated the taxonomy of organisms developed by the NLM's National Center for Biotechnology Information, and we are currently working together with the developers of the Gene Ontology to integrate this resource, as well. As additional, standard, ontologies become publicly available, we expect to integrate these into the UMLS construct.…”
Publicado 2003
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164“…We present an ontology for describing genomes, genome comparisons, their evolution and biological function. …”
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166“…We describe in this paper the structure and main features of a domain specific ontology for neuroscience, the BAMS Neuroanatomical Ontology. …”
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167por Larson, Stephen D., Fong, Lisa L., Gupta, Amarnath, Condit, Christopher, Bug, William J., Martone, Maryann E.“…Many applications of this ontology to image annotation, content-based retrieval of structural data, and integration of shared data across scales and researchers are also described.…”
Publicado 2007
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168por Lee, Taewon, Desai, Varsha G, Velasco, Cruz, Reis, Robert JS, Delongchamp, Robert R“…In studies that use DNA arrays to assess changes in gene expression, it is preferable to measure the significance of treatment effects on a group of genes from a pathway or functional category such as gene ontology terms (GO terms, ) because this facilitates the interpretation of effects and may markedly increase significance. …”
Publicado 2008
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169por Brewster, Christopher, Jupp, Simon, Luciano, Joanne, Shotton, David, Stevens, Robert D, Zhang, Ziqi“…Ontology construction for any domain is a labour intensive and complex process. …”
Publicado 2009
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170“…Using our efforts in building ontologies for neuroscience as an example, we examine the benefits and limits of ontologies as a solution for this data integration problem. …”
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171por Osborne, John D, Flatow, Jared, Holko, Michelle, Lin, Simon M, Kibbe, Warren A, Zhu, Lihua (Julie), Danila, Maria I, Feng, Gang, Chisholm, Rex L“…BACKGROUND: The human genome has been extensively annotated with Gene Ontology for biological functions, but minimally computationally annotated for diseases. …”
Publicado 2009
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172Publicado 2010“…The GO ontologies are expanding both in content and in structure. …”
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173por Balhoff, James P., Dahdul, Wasila M., Kothari, Cartik R., Lapp, Hilmar, Lundberg, John G., Mabee, Paula, Midford, Peter E., Westerfield, Monte, Vision, Todd J.“…Phenex can be configured to load only those ontologies pertinent to a taxonomic group of interest. …”
Publicado 2010
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174por Côté, Richard, Reisinger, Florian, Martens, Lennart, Barsnes, Harald, Vizcaino, Juan Antonio, Hermjakob, Henning“…The Ontology Lookup Service (OLS; http://www.ebi.ac.uk/ols) has been providing several means to query, browse and navigate biomedical ontologies and controlled vocabularies since it first went into production 4 years ago, and usage statistics indicate that it has become a heavily accessed service with millions of hits monthly. …”
Publicado 2010
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175“…We have developed the Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome. …”
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176“…Availability: http://bioonto.de/pmwiki.php/Main/PheneOntology Contact: rh497@cam.ac.uk…”
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177por Yoder, Matthew J., Mikó, István, Seltmann, Katja C., Bertone, Matthew A., Deans, Andrew R.“…The database interface returns an Open Biomedical Ontology (OBO) formatted version of the ontology and includes mechanisms for extracting candidate data and for publishing a searchable ontology to the Web. …”
Publicado 2010
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178“…Knowledge about human anatomy, radiology and diseases that is essential for medical images can be acquired from medical ontology terms and relations. These can then be analyzed using domain corpora to observe statistically most relevant term-relation-term patterns. …”
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180“…On one hand, we develop new image processing techniques, while on the other, we use the fusion of several well known ontological standards - Gene Ontology (GO), Clinical Bioinformatics Ontology (CBO), Foundational Model of Anatomy (FMA) and Microarry Gene Expression Data Ontology (MGED) in this framework. …”
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