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18801por Zhang, Bo, Li, Bo, Men, Xiao-Hui, Xu, Zhe-Wen, Wu, Hui, Qin, Xiang-Tian, Xu, Feng, Teng, Yi, Yuan, Shui-Jin, Jin, Li-Qun, Liu, Zhi-Qiang, Zheng, Yu-Guo“…In total, 4005 proteins were obtained and further annotated with Gene Ontology, Kyoto Encyclopedia of Genes and Genomes database. …”
Publicado 2020
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18802por Sun, Qiuwen, Li, Xia, Xu, Muchen, Zhang, Li, Zuo, Haiwei, Xin, Yong, Zhang, Longzhen, Gong, Ping“…A total of eight overlapped circRNAs, 43 miRNAs and 427 target genes were identified. Gene Ontology (GO) enrichment analysis showed these target genes were enriched in biological processes of regulation of histone methylation, Ras protein signal transduction and covalent chromatin modification etc. …”
Publicado 2020
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18803por Long, Jinhua, Zhang, Shichao, Zeng, Xianlin, Ouyang, Yan, Wang, Yun, Hu, Zuquan, Ye, Yuannong, Wu, Weili, Jin, Feng, Zhou, Shi, Zeng, Zhu“…The signaling pathways that play roles in the prognosis of IRGs were investigated by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, and the expression profiles of IRGs and OS in 499 HNSCC patients based on TCGA dataset were integrated. …”
Publicado 2020
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18804por Xie, Jian-Qin, Lu, Ya-Peng, Sun, Hong-Li, Gao, Li-Na, Song, Pei-Pei, Feng, Zhi-Jun, You, Chong-Ge“…Second, bioinformatics analysis of female-specific DEGs was performed. Gene Ontology (GO) functional annotation analysis shows that DEGs were mainly enriched in translational initiation, cytosolic ribosome, and structural constituent of ribosome. …”
Publicado 2020
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18805“…The functions of Maize proteins are annotated using the Gene Ontology (GO), which has more than 40000 terms and organizes GO terms in a direct acyclic graph (DAG). …”
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18806por Reshetnikov, Vasiliy V., Kisaretova, Polina E., Ershov, Nikita I., Shulyupova, Anastasia S., Oshchepkov, Dmitry Yu., Klimova, Natalia V., Ivanchihina, Anna V., Merkulova, Tatiana I., Bondar, Natalia P.“…These findings were supported by the results of weighted-gene co-expression network analysis (WGCNA) revealing the enrichment of MWM-cognitive-performance-correlating gene modules with very similar Gene Ontology terms. High-MWM-performance mice manifested mostly higher expression of the genes associated with glutamatergic transmission and long-term potentiation implementation, which are processes necessary for memory acquisition and consolidation. …”
Publicado 2020
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18807“…The analysis of Gene Ontology and protein–protein interactions of these differentially expressed genes (DEGs) was performed using online tools. …”
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18808por Zhao, Na, Ding, Xiaoyang, Lian, Taotao, Wang, Meng, Tong, Yan, Liang, Di, An, Qi, Sun, Siwen, Jackson, Scott A., Liu, Bao, Xu, Chunming“…By classifying genes into different regulatory divergence types, we found the trans-regulatory changes played a predominant role in transcriptional divergence between wild and cultivated soybean. The same gene ontology (GO) and protein family (Pfam) terms were found to be over-represented in DEGs and genes of cis-only between JY47 and GS, suggesting the substantial contribution of cis-regulatory divergences to the evolution of wild and cultivated soybeans. …”
Publicado 2020
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18809por Jie, Kong, Feng, Wang, Boxiang, Zhao, Maofeng, Gong, Jianbin, Zhang, Zhaoxuan, Lu, Yangyi, Zhou, Liang, Chen, Haobo, Su, Wensheng, Lou, Guoping, Chen, Jianping, Gu, Xu, He, Jianyan, Wen“…We then performed gene ontology (GO) function analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and gene set enrichment analysis (GSEA) for the functional annotation of DEGs. …”
Publicado 2020
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18810“…Next, the role of AUNIP in HCC and LUAD was explored via a co-expression analysis, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses, and a gene set variation analysis (GSVA). …”
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18811“…Significant genes identified by TWAS were then subjected to gene ontology (GO) and pathway enrichment analysis. The overlapped GO terms and pathways between enrichment analysis of TWAS significant genes and differentially expressed genes (DEGs) from the genome-wide mRNA expression profiling of IPF were also identified. …”
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18812por Shao, Jiahao, Bai, Xue, Pan, Ting, Li, Yanhong, Jia, Xianbo, Wang, Jie, Lai, Songjia“…Differentially methylated regions (DMRs) were identified using the option of the sliding window method, and online software DAVID Bioinformatics Resources 6.7 was used to perform Gene Ontology (GO) terms and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway enrichment analysis of DMRs-associated genes. …”
Publicado 2020
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18813por Winiarczyk, Dagmara, Winiarczyk, Mateusz, Winiarczyk, Stanisław, Michalak, Katarzyna, Adaszek, Łukasz“…Identified proteins were analyzed by Panther Gene Ontology software, and their possible connections with diabetic etiopathology were discussed. …”
Publicado 2020
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18814por Wang, Shuang, Tian, Jun, Wang, Jianzhong, Liu, Sizhu, Ke, Lianwei, Shang, Chaojiang, Yang, Jichun, Wang, Lin“…Finally, the cyan and purple modules were selected for further study. Gene ontology functional annotation and Kyoto Encyclopedia of Genes and Genomes pathway enrichment indicated that the cyan module was enriched in a variety of components, including protein binding, membrane, nucleoplasm, cytosol, poly(A) RNA binding, biosynthesis of antibiotics, carbon metabolism, endocytosis, citrate cycle, and metabolic pathways. …”
Publicado 2020
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18815“…Candidate genes were assessed for enrichment in gene ontology function and Kyoto Encyclopaedia of Genes and Genomes pathway. …”
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18816por Ge, Yanzhi, Zhou, Li, Chen, Zuxiang, Mao, Yingying, Li, Ting, Tong, Peijian, Shan, Letian“…The microarray datasets were consolidated and DEGs were acquired and further analyzed by bioinformatics techniques. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of DEGs were performed using R (version 3.6.1) software, respectively. …”
Publicado 2021
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18817por Guo, Changgang, Shao, Ting, Wei, Dadong, Li, Chunsheng, Liu, Fengjun, Li, Minghui, Gao, Zhiming, Bao, Guochang“…Enrichment analysis of gene ontology, Kyoto Encyclopedia of Genes and Genomes, and Reactome pathways revealed the interactions between these DEGs. …”
Publicado 2020
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18818“…We selected highly conservative modules using weighted gene co‑expression network analysis before performing the Gene Ontology, Kyoto Encyclopedia of Genes and Genomes pathway and Reactome enrichment analysis. …”
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18819por Lu, Yuanxiang, Li, Wensen, Liu, Ge, Yang, Yongbo, Xiao, Erwei, Mu, Senmao, Guo, Yuqi, Li, Deyu, Yan, Guoyi“…METHODS: Tumor samples of three DPC patients were collected and integrating RNA-seq analysis of tumor tissues and matched normal tissues were performed to discover differentially expressed genes (DEGs). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were carried out to understand the potential bio-functions of the DPC differentially expressed genes (DEGs). …”
Publicado 2021
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18820por Boylan, Kristin L. M., Afiuni-Zadeh, Somaieh, Geller, Melissa A., Argenta, Peter A., Griffin, Timothy J., Skubitz, Amy P. N.“…By Scaffold analysis of the protein Gene Ontology categories and functional analysis using PANTHER, the proteins were classified by cellular localization and molecular function, demonstrating that the Pap test fluid and cervical swab proteins are similar to each other, and also to the tumor extract. …”
Publicado 2021
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