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19781por Yu, Fangfang, Luo, Kangting, Wang, Miao, Luo, Jincai, Sun, Lei, Yu, Shuiyuan, Zuo, Juan, Wang, Yanjie“…Target genes of DE-miRNAs were predicted using miRanda and RNAhybrid databases, and the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway were enriched. …”
Publicado 2023
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19782por Ran, Yamei, Wu, Kangqi, Hu, Chenglin, Liang, Renzheng, Zhang, Li, Xiao, Juan, Peng, Yongmei, Sun, Wenjing“…Differentially expressed genes (DEG) and signaling pathways were analyzed by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis. …”
Publicado 2023
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19783por Li, Jialin, Guo, Siyu, Tan, Yingying, Zhang, Jingyuan, Wu, Zhishan, Stalin, Antony, Zhang, Fanqin, Huang, Zhihong, Wu, Chao, Liu, Xinkui, Huang, Jiaqi, Wu, Jiarui“…Protein-protein interaction network and module analyzes were used to screen for key targets. gene ontology and Kyoto encyclopedia of genes and genomes were performed to investigate the potentially relevant signaling pathways. …”
Publicado 2023
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19784“…The target genes of DE miRNAs were predicted with bioinformatics software, and the functional and pathway enrichment analysis was performed on gene ontology and the Kyoto encyclopedia of genes and genomes terms. …”
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19785por Van Assche, Evelien, Hohoff, Christa, Zang, Johannes, Knight, Matthew J., Baune, Bernhard T.“…The within-individual paired longitudinal analysis was performed using Welch’s t-test. Subsequently gene-ontology (GO) pathway analyses were performed. RESULTS: No CpG was genome-wide significant CpG (p < 5 × 10(–8)). …”
Publicado 2023
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19786por Wen, Xin, Xie, Rui, Wang, Hong-Gang, Zhang, Min-Na, He, Le, Zhang, Meng-Hui, Yang, Xiao-Zhong“…The ineffectiveness of FMT in KO mice was related to the decreased abundance of Akkermansia. Gene Ontology enrichment analysis showed that differentially expressed genes between each group were mainly involved in cytoplasmic translation and cellular response to DNA damage stimulus. …”
Publicado 2023
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19787por Haidar, Siwar, Lackey, Simon, Charette, Martin, Yoosefzadeh-Najafabadi, Mohsen, Gahagan, A. Claire, Hotte, Thomas, Belzile, Francois, Rajcan, Istvan, Golshani, Ashkan, Morrison, Malcolm J., Cober, Elroy R., Samanfar, Bahram“…Percent of phenotypic variance explained (PVE) and allele substitution effect (ASE) eliminated two of the five candidate SNPs, leaving three QTL regions on chromosomes 3, 6, and 13 (Chr3-3419152, Chr6-5098454, and Chr13-29649544). Based on the gene ontology (GO) enrichment analysis, 14 candidate genes whose function is predicted to include germination and cold tolerance related pathways were identified as candidate genes. …”
Publicado 2023
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19788por Wang, Chen, Ahsan, Taswar, Ding, Ao, Han, Di, Zang, Chao-Qun, Huang, Yu-Qian, Hussain, Khalid“…Gene function was annotated using non-redundant proteins from the National Center for Biotechnology Information (NCBI), Swiss-Prot, the Kyoto Encyclopedia of Genes and Genomes (KEGG), clusters of orthologous groups of proteins, gene ontology, pathogen-host interactions, and carbohydrate-active enZYmes. antiSMASH analysis predicted that strain TA-1 can produce the secondary metabolites siderophore, tailcyclized peptide, myxochelin, bacillibactin, paenibactin, myxochelin, griseobactin, benarthin, tailcyclized, and samylocyclicin. …”
Publicado 2023
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19789por Wang, Rui Jie, Li, Wen, Liu, Shi Nan, Wang, Si Yao, Jiang, Peng, Wang, Zhong Quan, Zhang, Xi“…RESULTS: Approximately 1166 differentially expressed proteins (DEPs) were identified in adults versus plerocercoids, of which 641 DEPs were upregulated and 525 were downregulated. Gene Ontology (GO), Clusters of Orthologous groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses indicated that most DEPs related to genetic information processing and metabolism of energy in adults seem to be more activated. …”
Publicado 2023
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19790por Chen, Jiasheng, Lin, Yuxin, zheng, Shukai, Chen, Qingshan, Tang, Shijie, Zhong, Xiaoping“…Through the analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG) and GeneOntology (GO) and Gene Set Enrichment Analysis (GSEA), the biological processes and signal pathways related to CBX3 expression were identified. …”
Publicado 2023
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19791por Siddiq, Mustafa M., Toro, Carlos A., Johnson, Nicholas P., Hansen, Jens, Xiong, Yuguang, Mellado, Wilfredo, Tolentino, Rosa E., Johnson, Kaitlin, Jayaraman, Gomathi, Suhail, Zaara, Harlow, Lauren, Dai, Jinye, Beaumont, Kristin G., Sebra, Robert, Willis, Dianna E., Cardozo, Christopher P., Iyengar, Ravi“…RESULTS: The supernatant fraction was highly enriched for mRNA from axons. Using Gene Ontology, the second most significant pathway for all DEGs was axonogenesis. …”
Publicado 2023
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19792por Sreedasyam, Avinash, Plott, Christopher, Hossain, Md Shakhawat, Lovell, John T, Grimwood, Jane, Jenkins, Jerry W, Daum, Christopher, Barry, Kerrie, Carlson, Joseph, Shu, Shengqiang, Phillips, Jeremy, Amirebrahimi, Mojgan, Zane, Matthew, Wang, Mei, Goodstein, David, Haas, Fabian B, Hiss, Manuel, Perroud, Pierre-François, Jawdy, Sara S, Yang, Yongil, Hu, Rongbin, Johnson, Jenifer, Kropat, Janette, Gallaher, Sean D, Lipzen, Anna, Shakirov, Eugene V, Weng, Xiaoyu, Torres-Jerez, Ivone, Weers, Brock, Conde, Daniel, Pappas, Marilia R, Liu, Lifeng, Muchlinski, Andrew, Jiang, Hui, Shyu, Christine, Huang, Pu, Sebastian, Jose, Laiben, Carol, Medlin, Alyssa, Carey, Sankalpi, Carrell, Alyssa A, Chen, Jin-Gui, Perales, Mariano, Swaminathan, Kankshita, Allona, Isabel, Grattapaglia, Dario, Cooper, Elizabeth A, Tholl, Dorothea, Vogel, John P, Weston, David J, Yang, Xiaohan, Brutnell, Thomas P, Kellogg, Elizabeth A, Baxter, Ivan, Udvardi, Michael, Tang, Yuhong, Mockler, Todd C, Juenger, Thomas E, Mullet, John, Rensing, Stefan A, Tuskan, Gerald A, Merchant, Sabeeha S, Stacey, Gary, Schmutz, Jeremy“…Combined, these web interfaces let users access differentially expressed genes, track orthologs across the Gene Atlas plants, graphically represent co-expressed genes, and visualize gene ontology and pathway enrichments.…”
Publicado 2023
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19793“…In addition to highlighting sex differences for individual miRNAs, gene ontology analysis suggested several broad categories in which sex-biased RNAs might act to establish sex differences in the embryonic mouse brain. …”
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19794por Zhang, Xi, Xie, Tingting, Li, Xiaoqi, Feng, Min, Mo, Guodong, Zhang, Qihong, Zhang, Xiquan“…We found that compared to the negative control (NC) group (transfected with pMD18T-EGFP), the chERV3 group exhibited 2538 up-regulated differentially expressed genes (DEGs) and 1828 down-regulated DEGs at 24 hours (h) and 1752 up-regulated DEGs and 1282 down-regulated DEGs at 48 h. Based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, the down-regulated DEGs were enriched mainly in immune-related processes such as the inflammatory response, innate immune response, and Toll-like receptor signaling pathway. …”
Publicado 2023
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19795por Han, Sai, Liu, Xiaoli, Ju, Shuang, Mu, Wendi, Abulikemu, Gulijinaiti, Zhen, Qianwei, Yang, Jiaqi, Zhang, Jingjing, Li, Yi, Liu, Hongli, Chen, Qian, Cui, Baoxia, Wu, Shuxia, Zhang, Youzhong“…METHODS: A total of 20 cervical cancer plasma samples, including 7 LNM-/LVSI-(NC), 4 LNM-/LVSI + (LVSI) and 9 LNM + /LVSI + (LNM) samples from a cohort, were subjected to DIA to identify differentially expressed proteins (DEPs) for LVSI and LNM. Subsequently, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed for DEP functional annotation. …”
Publicado 2023
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19796“…MYO6 genomic alterations were then investigated using the cBio Cancer Genomics Portal (cBioPortal) database. Gene Ontology (GO)/Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis and Gene Set Enrichment Analysis (GSEA) enrichment analysis were used to elucidate the biological processes and signaling pathways. …”
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19797por Yao, Mengying, Lian, Dawei, Wu, Meizhu, Zhou, Yuting, Fang, Yi, Zhang, Siyu, Zhang, Wenqiang, Yang, Yanyan, Li, Renfeng, Chen, Hong, Chen, Youqin, Shen, Aling, Peng, Jun“…To examine the therapeutic impact on hypertensive renal injury, fibrosis, and its underlying mechanisms, multiple techniques were employed, including hematoxylin and eosin staining, Masson trichrome staining, RNA sequencing, gene ontology (GO) function and pathway enrichment analysis and immunohistochemistry. …”
Publicado 2023
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19798por Zheng, Yan, Thi, Khin Mar, Lin, Lihui, Xie, Xiaofang, Khine, Ei Ei, Nyein, Ei Ei, Lin, Min Htay Wai, New, Win Win, Aye, San San, Wu, Weiren“…In the vicinity of these QTNs or QEIs, based on analyses of mutation type, gene ontology classification, haplotype, and expression pattern, we identified five candidate genes that are related to starch synthesis and endosperm development. …”
Publicado 2023
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19799por Chen, Kai, Wang, Yilin, Nong, Xiaoyan, Zhang, Yichi, Tang, Tang, Chen, Yun, Shen, Qikun, Yan, Changjie, Lü, Bing“…Further analysis of the co-expression and protein–protein interaction networks using gene ontology showed that OsDUF568 − related genes were enriched in cellular transports, metabolism and processes. …”
Publicado 2023
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19800por Liu, Sijia, Tian, Fei, Qi, Delin, Qi, Hongfang, Wang, Yang, Xu, Shixiao, Zhao, Kai“…The key DEGs were annotated using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis. …”
Publicado 2023
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