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  1. 2061
    “…Pastas is a new and open source Python package for the analysis of hydrogeological time series. …”
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    Pastas: Open Source Software for the Analysis of Groundwater Time Series
  2. 2062
    “…METHOD: Analysis has been performed using Python and R statistical software. Also, recent articles related to COVID-19 have been considered and reviewed. …”
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    COVID-19 pandemic lockdown: An emotional health perspective of Indians on Twitter
  3. 2063
    “…CONCLUSION: Machado aims to be a modern object-relational framework that uses the latest Python libraries to produce an effective open source resource for genomics research.…”
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    Machado: Open source genomics data integration framework
  4. 2064
    “…The first is to present audiomath (https://pypi.org/project/audiomath), a sound software library for Python that prioritizes the needs of neuroscientists. …”
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    audiomath: A neuroscientist's sound toolkit
  5. 2065
    “…The ISA-Tab framework enables scientists to publish metadata about their experiments in a plain text, machine-readable format that aims to confer that interoperability and reusability. A Python software package (isatools) is currently being developed to programmatically produce these metadata files. …”
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    isa4j: a scalable Java library for creating ISA-Tab metadata
  6. 2066
    “…RESULTS: In this work, we present the ISA API, a Python library for the creation, editing, parsing, and validating of ISA-Tab and ISA-JSON formats by using a common data model engineered as Python object classes. …”
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    ISA API: An open platform for interoperable life science experimental metadata
  7. 2067
    por Lamb, J, Elofsson, A
    Publicado 2021
    “…It is available both as a pip package in Python 3 and as source code on GitHub and is published under the GPLv3 license. …”
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    pyconsFold: a fast and easy tool for modeling and docking using distance predictions
  8. 2068
    “…Analysis can be performed via the Cytoscape GUI or CyREST programming interface using R (RCy3) or Python (py4cytoscape).…”
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    scNetViz: from single cells to networks using Cytoscape
  9. 2069
    por Reijnders, Maarten J.M.F.
    Publicado 2022
    “…METHODS: This paper describes Wei2GO: a weighted sequence similarity and python-based open-source protein function prediction software. …”
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    Wei2GO: weighted sequence similarity-based protein function prediction
  10. 2070
    “…The program, called CellVol, has been written in Python using the CSD Python API and can be run through the command line or through the Cambridge Crystallographic Data Centre’s Mercury interface.…”
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    Behavior of Occupied and Void Space in Molecular Crystal Structures at High Pressure
  11. 2071
    “…AVAILABILITY AND IMPLEMENTATION: The Python COT software with a detailed user’s manual and a vignette are freely available at https://github.com/MintaYLu/COT. …”
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    COT: an efficient and accurate method for detecting marker genes among many subtypes
  12. 2072
    “…AVAILABILITY AND IMPLEMENTATION: The QLattice is available as part of a python package (feyn), which is available at the Python Package Index (https://pypi.org/project/feyn/) and can be installed via pip. …”
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    Identifying interactions in omics data for clinical biomarker discovery using symbolic regression
  13. 2073
    “…We created the open source Python package q2-fondue to enable user-friendly acquisition, re-use and management of public sequence (meta)data while adhering to open data principles. …”
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    Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue
  14. 2074
    por Schriever, Hannah, Kostka, Dennis
    Publicado 2022
    “…Notably, vaeda outperforms other python-based methods for doublet annotation. Altogether, vaeda is a robust and competitive method for scRNA-seq doublet annotation and may be of particular interest in the context of python-based workflows. …”
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    Vaeda computationally annotates doublets in single-cell RNA sequencing data
  15. 2075
    “…MOTIVATION: We present dnadna, a flexible python-based software for deep learning inference in population genetics. …”
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    dnadna: a deep learning framework for population genetics inference
  16. 2076
    por Viesná, Е., Fishman, V.
    Publicado 2022
    “…The project is open-source software, distributed under GNU GPL v3, entirely written in the programming language Python, and based on well-maintained packages and commonly used data formats. …”
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    FastContext: A tool for identification of adapters and other sequence patterns in next generation sequencing (NGS) data
  17. 2077
    “…The acquisition workflow is built using Pycro-Manager, a Python package that bridges hardware control libraries of the Java-based open-source microscopy software Micro-Manager in a Python environment. …”
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    Hardware-software co-design of an open-source automatic multimodal whole slide histopathology imaging system
  18. 2078
    “…AVAILABILITY AND IMPLEMENTATION: CONTRABASS is available as an open source Python package at https://github.com/openCONTRABASS/CONTRABASS under GPL-3.0 License. …”
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    CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities
  19. 2079
    “…In this work, we present an open-source Python project called MOCCA for the analysis of HPLC–DAD (photodiode array detector) raw data. …”
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    Open-Source Chromatographic Data Analysis for Reaction Optimization and Screening
  20. 2080
    “…The interface was implemented in Python, allowing for easy integration with existing robotics development workflows, and a web interface was developed for direct control of the robot via the web. …”
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    How can social robot use cases in healthcare be pushed - with an interoperable programming interface
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